Variant report

Variant	rs7246595
Chromosome Location	chr19:39488741-39488742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1062261	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1139251	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11673044	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11673637	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12610200	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12610248	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12982199	0.81[EUR][1000 genomes]
rs4802007	0.81[EUR][1000 genomes]
rs4803181	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs637972	0.85[ASN][1000 genomes]
rs649150	0.81[ASN][1000 genomes]
rs650027	0.85[ASN][1000 genomes]
rs7246678	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7246775	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7259473	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8100503	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8109176	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7246595	CTB-189B5.3	cis	Skin Sun Exposed Lower leg	GTEx
rs7246595	CTB-189B5.3	cis	Esophagus Mucosa	GTEx
rs7246595	FBXO27	cis	Skin Sun Exposed Lower leg	GTEx
rs7246595	FBXO27	cis	Esophagus Mucosa	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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