Variant report

Variant	rs11673637
Chromosome Location	chr19:39502078-39502079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10416823	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10417436	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10424632	0.83[AMR][1000 genomes]
rs10424827	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10426645	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1062261	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853723	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10853724	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11083499	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11083500	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11083501	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11083502	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1139251	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11667641	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11670486	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11670520	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11673044	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11880441	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11883422	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12610200	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12610248	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12971842	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12972850	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12972978	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12978163	0.87[ASN][1000 genomes]
rs12978749	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12982199	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12982349	0.86[ASN][1000 genomes]
rs12982529	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12985447	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1840745	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1840746	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1840747	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1840748	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1864191	0.80[ASN][1000 genomes]
rs1869983	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36154890	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3848623	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4280369	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4802007	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4803181	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4803185	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4803186	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4803187	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4803188	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4803193	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6508835	0.89[ASN][1000 genomes]
rs6508836	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6508837	0.89[ASN][1000 genomes]
rs6508838	0.86[ASN][1000 genomes]
rs6508839	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6508840	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6508841	0.86[ASN][1000 genomes]
rs6508842	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6508843	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7246595	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7246678	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7246775	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7247801	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7248513	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7248652	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7250431	0.83[ASN][1000 genomes]
rs7251264	0.83[ASN][1000 genomes]
rs7255211	0.82[ASN][1000 genomes]
rs7256126	0.85[ASN][1000 genomes]
rs7258862	0.83[ASN][1000 genomes]
rs7259473	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7259801	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8100503	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8103187	0.83[ASN][1000 genomes]
rs8104751	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8104899	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8104990	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8105865	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8109176	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11673637	CTB-189B5.3	cis	Skin Sun Exposed Lower leg	GTEx
rs11673637	CTB-189B5.3	cis	Esophagus Mucosa	GTEx
rs11673637	FBXO27	cis	Skin Sun Exposed Lower leg	GTEx
rs11673637	FBXO27	cis	Esophagus Mucosa	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39494600-39503400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr19:39496600-39504400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr19:39496600-39515800	Weak transcription	Ovary	ovary
7	chr19:39498400-39516600	Weak transcription	A549	lung
8	chr19:39499400-39516600	Weak transcription	Brain Anterior Caudate	brain
9	chr19:39499800-39516800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr19:39500000-39515600	Weak transcription	Brain Substantia Nigra	brain
11	chr19:39501600-39514800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr19:39501800-39515800	Weak transcription	Adipose Nuclei	Adipose
13	chr19:39502000-39506800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr19:39502000-39515400	Weak transcription	Fetal Intestine Small	intestine

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