Variant report

Variant	rs72482825
Chromosome Location	chr1:93864335-93864336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3767965	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61745894	1.00[AMR][1000 genomes]
rs6667727	1.00[AMR][1000 genomes]
rs6690225	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514162	1.00[AMR][1000 genomes]
rs7527559	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550868	1.00[AMR][1000 genomes]
rs7550887	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93853200-93866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:93861000-93865400	Weak transcription	HMEC	breast
3	chr1:93861200-93865200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:93861800-93865200	Weak transcription	NHEK	skin
5	chr1:93862000-93865400	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links