Variant report

Variant	rs3767965
Chromosome Location	chr1:93819841-93819842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:93819540-93819876	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93809720..93812337-chr1:93819779..93821758,3	MCF-7	breast:

Variant related genes	Relation type
DR1	TF binding region
ENSG00000223745	Chromatin interaction
ENSG00000117505	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1081523	0.87[ASN][1000 genomes]
rs1081524	0.87[ASN][1000 genomes]
rs1081525	0.87[ASN][1000 genomes]
rs1570528	1.00[ASN][1000 genomes]
rs3754187	1.00[EUR][1000 genomes]
rs61745894	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6658017	1.00[EUR][1000 genomes]
rs6667727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670332	1.00[EUR][1000 genomes]
rs6690225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72482825	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514162	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527424	1.00[EUR][1000 genomes]
rs7527559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7546661	0.87[ASN][1000 genomes]
rs7550868	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7550887	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs771448	0.87[ASN][1000 genomes]
rs771456	1.00[ASN][1000 genomes]
rs771467	0.87[ASN][1000 genomes]
rs771468	0.87[ASN][1000 genomes]
rs771469	0.87[ASN][1000 genomes]
rs771471	0.87[ASN][1000 genomes]
rs771475	0.87[ASN][1000 genomes]
rs771477	0.87[ASN][1000 genomes]
rs810028	0.87[ASN][1000 genomes]
rs812789	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93812800-93823800	Weak transcription	Spleen	Spleen
2	chr1:93812800-93831000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:93812800-93832200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:93813000-93823800	Weak transcription	Gastric	stomach
5	chr1:93813400-93820200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:93813400-93840000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:93813400-93840400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:93814200-93823600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:93814200-93823800	Weak transcription	Right Ventricle	heart
10	chr1:93814800-93820400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:93815000-93820200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:93815200-93821800	Weak transcription	Fetal Stomach	stomach
13	chr1:93815400-93839800	Weak transcription	Aorta	Aorta
14	chr1:93815600-93820000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:93815600-93820200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:93815600-93821000	Weak transcription	Brain Germinal Matrix	brain
17	chr1:93815600-93834800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:93816000-93823800	Weak transcription	Stomach Mucosa	stomach
19	chr1:93816000-93832200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:93816200-93823400	Weak transcription	HSMMtube	muscle
21	chr1:93816600-93820200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:93816600-93841800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:93816800-93820000	Weak transcription	Colonic Mucosa	Colon
24	chr1:93816800-93821800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:93816800-93841200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:93817200-93820200	Weak transcription	Brain Anterior Caudate	brain
27	chr1:93817200-93820200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr1:93817400-93820200	Weak transcription	Brain Angular Gyrus	brain
29	chr1:93817400-93822400	Weak transcription	Esophagus	oesophagus
30	chr1:93817400-93822800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr1:93817400-93823400	Weak transcription	Lung	lung
32	chr1:93817600-93823800	Weak transcription	Fetal Brain Female	brain
33	chr1:93817600-93824600	Strong transcription	Fetal Intestine Large	intestine
34	chr1:93817800-93820000	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr1:93817800-93820800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
36	chr1:93817800-93822400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:93817800-93832400	Weak transcription	Psoas Muscle	Psoas
38	chr1:93818000-93820000	Enhancers	Brain Hippocampus Middle	brain
39	chr1:93818000-93826400	Strong transcription	Placenta	Placenta
40	chr1:93818000-93835400	Weak transcription	Small Intestine	intestine
41	chr1:93818200-93820000	Weak transcription	NHLF	lung
42	chr1:93818200-93820600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr1:93818200-93821800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:93818200-93823600	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr1:93818200-93823600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr1:93818200-93823800	Weak transcription	Pancreas	Pancrea
47	chr1:93818200-93826400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:93818200-93826600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
49	chr1:93818400-93820200	Weak transcription	K562	blood
50	chr1:93818400-93823200	Strong transcription	Monocytes-CD14+_RO01746	blood

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