Variant report

Variant	rs7527424
Chromosome Location	chr1:93708521-93708522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs3754187	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767965	1.00[EUR][1000 genomes]
rs485622	1.00[ASN][1000 genomes]
rs488646	0.84[ASN][1000 genomes]
rs504810	1.00[ASN][1000 genomes]
rs506556	1.00[ASN][1000 genomes]
rs519723	1.00[ASN][1000 genomes]
rs605759	1.00[ASN][1000 genomes]
rs6604040	1.00[EUR][1000 genomes]
rs6658017	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6667727	1.00[EUR][1000 genomes]
rs6670332	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690225	1.00[EUR][1000 genomes]
rs693872	1.00[ASN][1000 genomes]
rs7514162	1.00[EUR][1000 genomes]
rs7527559	1.00[EUR][1000 genomes]
rs7550868	1.00[EUR][1000 genomes]
rs7550887	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830625	chr1:93566378-93735246	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93647000-93756400	Weak transcription	Gastric	stomach
2	chr1:93647200-93757600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:93666600-93727000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:93682400-93708800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:93685600-93709200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:93688200-93714800	Weak transcription	HSMMtube	muscle
7	chr1:93690200-93708600	Weak transcription	NHLF	lung
8	chr1:93690400-93729400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:93691200-93732400	Weak transcription	HUVEC	blood vessel
10	chr1:93692200-93787800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:93693400-93709200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr1:93702400-93708600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:93703600-93709200	Weak transcription	Fetal Heart	heart
14	chr1:93704200-93729800	Weak transcription	Hela-S3	cervix
15	chr1:93704800-93708600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:93704800-93710800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:93705200-93709000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:93705400-93709000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:93705400-93709400	ZNF genes & repeats	Dnd41	blood
20	chr1:93706200-93708600	Weak transcription	HMEC	breast
21	chr1:93706200-93708600	Weak transcription	NHDF-Ad	bronchial
22	chr1:93706200-93710200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
23	chr1:93706400-93709600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:93706400-93727000	Weak transcription	K562	blood
25	chr1:93706600-93708600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr1:93706600-93709200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
27	chr1:93706600-93710000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr1:93706600-93710000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
29	chr1:93706600-93710200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
30	chr1:93706600-93710200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr1:93706600-93717200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr1:93706800-93709600	Strong transcription	Primary T cells from cord blood	blood
33	chr1:93706800-93710200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:93707000-93727400	Weak transcription	Liver	Liver
35	chr1:93707200-93708800	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:93707200-93709400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr1:93707200-93710000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr1:93707400-93708800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:93707400-93709200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
40	chr1:93707400-93709200	ZNF genes & repeats	GM12878-XiMat	blood
41	chr1:93707400-93709400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
42	chr1:93707400-93709400	Strong transcription	A549	lung
43	chr1:93707400-93709600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr1:93707400-93709600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr1:93707400-93709800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
46	chr1:93707600-93708600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr1:93707600-93708600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:93707600-93709600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr1:93707600-93709600	ZNF genes & repeats	Primary B cells from cord blood	blood
50	chr1:93707600-93709600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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