Variant report

Variant	rs724971
Chromosome Location	chr6:15271364-15271365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15270888..15272572-chr6:15278254..15280290,2	K562	blood:
2	chr6:15265107..15267530-chr6:15269277..15271589,2	MCF-7	breast:
3	chr6:15268694..15271371-chr6:15290123..15292738,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1000399	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11962776	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11965232	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11966818	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16876166	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16876169	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16876182	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17712950	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4310061	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57650809	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59272746	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60410720	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73359692	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73359693	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7769631	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15251200-15279400	Weak transcription	A549	lung
2	chr6:15261000-15283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15261200-15275000	Weak transcription	HMEC	breast
4	chr6:15263000-15271400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:15264200-15272800	Enhancers	Brain Angular Gyrus	brain
6	chr6:15265400-15279000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:15265800-15274800	Weak transcription	NHEK	skin
8	chr6:15266000-15275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:15266200-15279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:15267200-15279600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:15267400-15271400	Enhancers	HepG2	liver
12	chr6:15267400-15275000	Weak transcription	Osteobl	bone
13	chr6:15268000-15272600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:15268000-15279800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:15268200-15272000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:15268400-15274800	Weak transcription	Liver	Liver
17	chr6:15268600-15272600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:15269200-15272400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:15269200-15272600	Enhancers	Brain Anterior Caudate	brain
20	chr6:15269200-15275200	Weak transcription	HSMM	muscle
21	chr6:15269200-15290000	Weak transcription	NHLF	lung
22	chr6:15269400-15271800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:15269400-15272600	Enhancers	Brain Hippocampus Middle	brain
24	chr6:15269400-15274200	Weak transcription	Psoas Muscle	Psoas
25	chr6:15269400-15274800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:15269400-15274800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:15269400-15274800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:15269400-15275200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:15269400-15276800	Weak transcription	NH-A	brain
30	chr6:15269600-15271400	Weak transcription	K562	blood
31	chr6:15269600-15271600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:15269600-15272000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:15269600-15272400	Weak transcription	Primary T cells from cord blood	blood
34	chr6:15269600-15273400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr6:15269600-15274800	Weak transcription	Adipose Nuclei	Adipose
36	chr6:15269600-15275000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:15269600-15275000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:15269600-15275000	Weak transcription	Right Ventricle	heart
39	chr6:15269600-15275200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:15269600-15275200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:15269600-15275800	Weak transcription	Fetal Brain Female	brain
42	chr6:15269600-15276800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:15269600-15276800	Weak transcription	Pancreas	Pancrea
44	chr6:15269800-15273400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
45	chr6:15269800-15274400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:15269800-15274400	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr6:15269800-15274600	Weak transcription	Fetal Lung	lung
48	chr6:15269800-15275000	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:15269800-15275200	Weak transcription	Fetal Intestine Small	intestine
50	chr6:15269800-15275200	Weak transcription	Left Ventricle	heart

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