Variant report

Variant	rs73359693
Chromosome Location	chr6:15256925-15256926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15256517..15259439-chr6:15263746..15265326,2	MCF-7	breast:
2	chr6:15254326..15257195-chr6:15265565..15267643,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1000399	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11962776	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11965232	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11966818	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16876166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16876182	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17712950	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4310061	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57650809	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59272746	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60410720	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs724971	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73359692	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769631	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15250000-15262000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr6:15250200-15259200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:15250400-15257000	Enhancers	Thymus	Thymus
4	chr6:15250400-15257000	Enhancers	Dnd41	blood
5	chr6:15250400-15258600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:15250400-15259200	Weak transcription	HMEC	breast
7	chr6:15251000-15257000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:15251200-15279400	Weak transcription	A549	lung
9	chr6:15251400-15257400	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:15252200-15257000	Flanking Active TSS	GM12878-XiMat	blood
11	chr6:15252400-15260000	Genic enhancers	Fetal Thymus	thymus
12	chr6:15252600-15257200	Enhancers	Small Intestine	intestine
13	chr6:15253200-15262000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:15253200-15262200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:15253200-15269600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:15253400-15257400	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:15253600-15257000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:15253600-15261600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:15253600-15262200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:15253800-15257000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr6:15253800-15258400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:15253800-15261600	Enhancers	Brain Anterior Caudate	brain
23	chr6:15253800-15262000	Enhancers	Brain Cingulate Gyrus	brain
24	chr6:15254000-15257000	Enhancers	Left Ventricle	heart
25	chr6:15254000-15257000	Enhancers	Psoas Muscle	Psoas
26	chr6:15254000-15258200	Genic enhancers	K562	blood
27	chr6:15254000-15261800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:15254000-15262000	Enhancers	Brain Hippocampus Middle	brain
29	chr6:15254200-15269600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:15254400-15259800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:15254600-15263200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:15254600-15264800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:15254800-15258200	Weak transcription	NHDF-Ad	bronchial
34	chr6:15254800-15259000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:15254800-15259000	Weak transcription	NH-A	brain
36	chr6:15254800-15260200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr6:15254800-15262800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:15254800-15264200	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr6:15254800-15269800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:15255000-15257200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:15255000-15257200	Weak transcription	Osteobl	bone
42	chr6:15255000-15261200	Enhancers	Fetal Muscle Leg	muscle
43	chr6:15255200-15258800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:15255200-15261600	Weak transcription	Placenta	Placenta
45	chr6:15255400-15257200	Enhancers	Stomach Mucosa	stomach
46	chr6:15255400-15258800	Enhancers	HSMMtube	muscle
47	chr6:15255400-15259600	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr6:15255400-15261200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:15255600-15257000	Enhancers	Right Atrium	heart
50	chr6:15255600-15257200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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