Variant report

Variant	rs725340
Chromosome Location	chr9:117249874-117249875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:117249856-117250248	K562	blood:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
2	SMC3	chr9:117249667-117250695	SK-N-SH	brain:	n/a	chr9:117250312-117250320 chr9:117250046-117250060
3	MAZ	chr9:117249807-117250226	K562	blood:	n/a	n/a
4	RAD21	chr9:117249833-117250322	HepG2	liver:	n/a	chr9:117250001-117250011 chr9:117250045-117250064 chr9:117250311-117250320
5	TEAD4	chr9:117249851-117250225	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr9:117249838-117250221	ECC-1	luminal epithelium:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
7	CTCF	chr9:117249758-117250283	K562	blood:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
8	RAD21	chr9:117249859-117250283	Hela-S3	cervix:	n/a	chr9:117250001-117250011 chr9:117250045-117250064
9	CTCF	chr9:117249832-117250243	H1-hESC	embryonic stem cell:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
10	BCLAF1	chr9:117249784-117250245	GM12878	blood:	n/a	n/a
11	EBF1	chr9:117249647-117251223	GM12878	blood:	n/a	chr9:117250144-117250154 chr9:117250003-117250013 chr9:117250004-117250013 chr9:117250144-117250153 chr9:117250004-117250015 chr9:117250142-117250155 chr9:117250144-117250153
12	CTCF	chr9:117249741-117250338	MCF-7	breast:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
13	ZNF263	chr9:117249807-117250616	HEK293-T-REx	kidney:	n/a	n/a
14	CTCF	chr9:117249847-117250294	K562	blood:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
15	CTCF	chr9:117249702-117250373	HCT-116	colon:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
16	CTCF	chr9:117249836-117250335	A549	lung:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
17	RAD21	chr9:117249873-117250232	SK-N-SH_RA	brain:	n/a	chr9:117250001-117250011 chr9:117250045-117250064
18	RAD21	chr9:117249729-117250404	ECC-1	luminal epithelium:	n/a	chr9:117250001-117250011 chr9:117250045-117250064 chr9:117250311-117250320
19	RAD21	chr9:117249780-117250431	HCT-116	colon:	n/a	chr9:117250001-117250011 chr9:117250045-117250064 chr9:117250311-117250320
20	CTCF	chr9:117249836-117250305	IMR90	lung:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
21	RAD21	chr9:117249870-117250251	A549	lung:	n/a	chr9:117250001-117250011 chr9:117250045-117250064
22	MYC	chr9:117249856-117250292	K562	blood:	n/a	n/a
23	SMC3	chr9:117249845-117250298	Hela-S3	cervix:	n/a	chr9:117250046-117250060
24	RAD21	chr9:117249723-117250380	A549	lung:	n/a	chr9:117250001-117250011 chr9:117250045-117250064 chr9:117250311-117250320
25	CTCF	chr9:117249817-117250225	K562	blood:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
26	CTCF	chr9:117249821-117250353	GM12878	blood:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
27	SMC3	chr9:117249835-117250280	GM12878	blood:	n/a	chr9:117250046-117250060
28	RAD21	chr9:117249811-117250294	SK-N-SH_RA	brain:	n/a	chr9:117250001-117250011 chr9:117250045-117250064
29	SMC3	chr9:117249850-117250417	K562	blood:	n/a	chr9:117250312-117250320 chr9:117250046-117250060
30	CTCF	chr9:117249585-117250639	A549	lung:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
31	ZNF143	chr9:117249852-117250355	H1-hESC	embryonic stem cell:	n/a	n/a
32	SMC3	chr9:117249828-117250299	HepG2	liver:	n/a	chr9:117250046-117250060
33	RAD21	chr9:117249791-117250356	A549	lung:	n/a	chr9:117250001-117250011 chr9:117250045-117250064 chr9:117250311-117250320
34	TFAP2C	chr9:117249778-117250242	Hela-S3	cervix:	n/a	chr9:117250003-117250018
35	RAD21	chr9:117249747-117250443	MCF-7	breast:	n/a	chr9:117250001-117250011 chr9:117250045-117250064 chr9:117250311-117250320
36	ZNF143	chr9:117249849-117250998	GM12878	blood:	n/a	n/a
37	STAT3	chr9:117249749-117250487	GM12878	blood:	n/a	n/a
38	CTCF	chr9:117249819-117250229	T-47D	breast:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
39	RAD21	chr9:117249788-117250275	HepG2	liver:	n/a	chr9:117250001-117250011 chr9:117250045-117250064
40	RAD21	chr9:117249811-117250330	ECC-1	luminal epithelium:	n/a	chr9:117250001-117250011 chr9:117250045-117250064 chr9:117250311-117250320
41	STAT1	chr9:117249607-117250424	GM12878	blood:	n/a	n/a
42	CTCF	chr9:117249793-117250278	HepG2	liver:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
43	EBF1	chr9:117249763-117250427	GM12878	blood:	n/a	chr9:117250144-117250154 chr9:117250003-117250013 chr9:117250004-117250013 chr9:117250144-117250153 chr9:117250004-117250015 chr9:117250142-117250155 chr9:117250144-117250153
44	CTCF	chr9:117249837-117250278	T-47D	breast:	n/a	chr9:117250044-117250062 chr9:117250046-117250054
45	RAD21	chr9:117249857-117250367	H1-hESC	embryonic stem cell:	n/a	chr9:117250001-117250011 chr9:117250045-117250064 chr9:117250311-117250320
46	RAD21	chr9:117249847-117250219	GM12878	blood:	n/a	chr9:117250001-117250011 chr9:117250045-117250064
47	ZNF143	chr9:117249862-117250592	K562	blood:	n/a	n/a
48	TFAP2A	chr9:117249800-117250257	Hela-S3	cervix:	n/a	chr9:117250003-117250017 chr9:117250004-117250015 chr9:117250004-117250015 chr9:117250003-117250018 chr9:117250004-117250015 chr9:117250004-117250015
49	RAD21	chr9:117249658-117250463	HCT-116	colon:	n/a	chr9:117250001-117250011 chr9:117250045-117250064 chr9:117250311-117250320
50	RAD21	chr9:117249839-117250287	IMR90	lung:	n/a	chr9:117250001-117250011 chr9:117250045-117250064

No.	Distal block	Cell Line	Cell type
1	chr9:117249651..117250434-chr9:117381196..117382137,2	MCF-7	breast:
2	chr9:117167569..117168499-chr9:117249538..117250543,3	MCF-7	breast:
3	chr9:117196895..117197704-chr9:117249604..117250159,2	MCF-7	breast:
4	chr9:117208605..117211490-chr9:117247459..117250146,2	K562	blood:
5	chr9:117248633..117250235-chr9:117372015..117373947,2	MCF-7	breast:
6	chr9:117248259..117251090-chr9:117261687..117264504,2	MCF-7	breast:
7	chr9:117249037..117251044-chr9:117266336..117269123,2	MCF-7	breast:
8	chr9:117243687..117246458-chr9:117248711..117251442,3	K562	blood:
9	chr9:117246769..117248529-chr9:117248534..117250090,3	K562	blood:
10	chr9:117247951..117250625-chr9:117265955..117268713,3	MCF-7	breast:
11	chr9:117246769..117248529-chr9:117248537..117250090,2	K562	blood:
12	chr9:117249656..117250225-chr9:117415559..117416512,3	MCF-7	breast:
13	chr9:117249141..117251931-chr9:117260890..117262536,2	K562	blood:
14	chr9:117248365..117250342-chr9:117251852..117253690,2	MCF-7	breast:
15	chr9:117249614..117250146-chr9:117310278..117311144,2	MCF-7	breast:
16	chr9:117249627..117250464-chr9:117418207..117418920,2	MCF-7	breast:
17	chr9:117249626..117250546-chr9:117415527..117416432,3	MCF-7	breast:
18	chr9:117249371..117250397-chr9:117269698..117270686,4	MCF-7	breast:
19	chr9:117243687..117246488-chr9:117248496..117251442,4	K562	blood:
20	chr9:117248554..117250072-chr9:117374914..117376570,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271214	TF binding region
ENSG00000157693	Chromatin interaction
ENSG00000095397	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1000709	0.91[JPT][hapmap]
rs1010519	1.00[CEU][hapmap]
rs10759710	0.91[JPT][hapmap]
rs10759711	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10759712	0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10817619	0.83[ASN][1000 genomes]
rs10817621	0.83[ASN][1000 genomes]
rs10817622	0.87[JPT][hapmap]
rs10817623	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10817625	0.91[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10817626	0.84[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10817630	0.94[ASN][1000 genomes]
rs10982237	0.82[ASW][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10982239	0.86[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10982246	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10982247	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10982248	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10982255	0.91[JPT][hapmap]
rs10982256	0.91[JPT][hapmap]
rs10982268	0.87[JPT][hapmap]
rs1123056	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11787667	0.87[JPT][hapmap]
rs11789406	0.91[JPT][hapmap]
rs12551529	0.83[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12552405	0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs13286280	0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs13286430	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs13286452	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1535959	0.91[JPT][hapmap]
rs1535960	0.84[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1535962	0.91[JPT][hapmap]
rs1555700	0.91[JPT][hapmap]
rs16929770	0.84[MKK][hapmap]
rs2296261	0.91[TSI][hapmap]
rs4327928	0.86[ASN][1000 genomes]
rs4979410	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs4979414	0.91[JPT][hapmap]
rs4979415	0.83[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.94[ASN][1000 genomes]
rs4979416	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.94[ASN][1000 genomes]
rs4979418	0.91[JPT][hapmap]
rs7023161	0.94[ASN][1000 genomes]
rs7034891	0.81[CHD][hapmap];0.91[JPT][hapmap]
rs7036125	0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7043736	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7046135	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7852982	0.85[ASN][1000 genomes]
rs7865843	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
3	esv2422492	chr9:116811294-117366643	Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
4	nsv1051544	chr9:116944940-117443031	ZNF genes & repeats Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
5	nsv540203	chr9:116944940-117443031	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
6	nsv1048093	chr9:116945025-117456210	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
7	nsv1050991	chr9:116953739-117442999	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
8	nsv1046311	chr9:116953739-117447142	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
9	nsv1052877	chr9:116953739-117456210	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
10	nsv1039681	chr9:116953739-117457158	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
11	nsv1051987	chr9:116955841-117453668	Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
12	nsv1044374	chr9:116955841-117460150	Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
13	nsv466534	chr9:116956268-117455810	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
14	nsv615234	chr9:116956268-117455810	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
15	nsv1048817	chr9:116957958-117456210	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
16	nsv615235	chr9:116958144-117367061	ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
17	nsv615236	chr9:116958144-117455810	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
18	nsv466535	chr9:116958144-117456175	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
19	nsv615237	chr9:116958144-117456175	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
20	nsv615238	chr9:116958144-117458475	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
21	nsv430094	chr9:116958446-117456446	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
22	nsv1053756	chr9:116975934-117443031	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
23	nsv540204	chr9:116975934-117443031	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
24	nsv1047704	chr9:116978041-117399362	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
25	nsv540205	chr9:116978041-117399362	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
26	nsv530950	chr9:117009156-117399361	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
27	nsv916139	chr9:117009169-117399454	Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
28	nsv530951	chr9:117032675-117439804	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
29	nsv831693	chr9:117116450-117281895	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117240000-117266600	Weak transcription	Gastric	stomach
2	chr9:117241000-117255800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:117241600-117259800	Weak transcription	Thymus	Thymus
4	chr9:117244200-117253600	Weak transcription	Fetal Stomach	stomach
5	chr9:117244400-117250800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:117245000-117266600	Weak transcription	Right Atrium	heart
7	chr9:117245200-117253800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:117245400-117250000	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:117245400-117253800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:117246600-117250400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:117246800-117250000	Enhancers	HMEC	breast
12	chr9:117247200-117250000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:117247400-117254000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:117247600-117250000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr9:117247600-117250000	Weak transcription	Spleen	Spleen
16	chr9:117247600-117250400	Enhancers	K562	blood
17	chr9:117247600-117250400	Enhancers	NHEK	skin
18	chr9:117247600-117256000	Weak transcription	Pancreas	Pancrea
19	chr9:117247600-117264400	Weak transcription	Ovary	ovary
20	chr9:117247600-117266400	Weak transcription	Esophagus	oesophagus
21	chr9:117247800-117250000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:117247800-117250000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:117247800-117250000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr9:117247800-117250200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:117247800-117253800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:117248400-117250400	Enhancers	Hela-S3	cervix
27	chr9:117249000-117250000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr9:117249000-117250000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr9:117249400-117253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:117249400-117258400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr9:117249600-117250200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:117249600-117250400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:117249600-117250400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr9:117249600-117250600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:117249600-117251400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr9:117249800-117250000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:117249800-117250000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr9:117249800-117250000	Enhancers	Brain Anterior Caudate	brain
39	chr9:117249800-117250200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:117249800-117250200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr9:117249800-117250200	Enhancers	NHDF-Ad	bronchial
42	chr9:117249800-117250400	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr9:117249800-117250400	Enhancers	H1 Cell Line	embryonic stem cell
44	chr9:117249800-117250400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:117249800-117250400	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr9:117249800-117250400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr9:117249800-117250400	Enhancers	Adipose Nuclei	Adipose
48	chr9:117249800-117250400	Enhancers	Brain Angular Gyrus	brain
49	chr9:117249800-117250400	Enhancers	Brain Cingulate Gyrus	brain
50	chr9:117249800-117250400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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