Variant report

Variant	rs7256373
Chromosome Location	chr19:36253716-36253717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36248580..36254743-chr19:36274692..36280659,6	K562	blood:
2	chr19:36249097..36250751-chr19:36253279..36257027,3	K562	blood:
3	chr19:36251835..36255945-chr19:36256071..36258525,4	K562	blood:
4	chr19:36252030..36254335-chr19:36255170..36257529,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000004777	Chromatin interaction
ENSG00000167595	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11878987	0.98[EUR][1000 genomes]
rs16970645	1.00[ASN][1000 genomes]
rs16970648	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17638717	1.00[ASN][1000 genomes]
rs2234361	1.00[ASN][1000 genomes]
rs2284149	1.00[ASN][1000 genomes]
rs231241	0.98[EUR][1000 genomes]
rs34485834	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34632325	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843967	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58103380	1.00[ASN][1000 genomes]
rs59994522	1.00[ASN][1000 genomes]
rs7250756	1.00[ASN][1000 genomes]
rs7252936	0.83[EUR][1000 genomes]
rs7254581	0.98[EUR][1000 genomes]
rs7256726	1.00[ASN][1000 genomes]
rs7257917	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
3	nsv458566	chr19:36156588-36265508	Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv579422	chr19:36156588-36265508	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv911631	chr19:36169285-36290977	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv911632	chr19:36174176-36288297	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	nsv911633	chr19:36206050-36283847	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
8	nsv911634	chr19:36206050-36290977	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
9	nsv543996	chr19:36210269-36265431	Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv1057830	chr19:36210269-36279794	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv543997	chr19:36210269-36279794	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv911635	chr19:36217333-36283847	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv458567	chr19:36221051-36283847	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
14	nsv579423	chr19:36221051-36283847	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
15	nsv911636	chr19:36240960-36290977	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36249800-36255000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:36249800-36265600	Weak transcription	Right Atrium	heart
3	chr19:36249800-36265800	Weak transcription	Fetal Kidney	kidney
4	chr19:36250000-36254800	Weak transcription	Adipose Nuclei	Adipose
5	chr19:36250000-36255000	Weak transcription	Esophagus	oesophagus
6	chr19:36250000-36255800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:36250000-36258400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:36250000-36265600	Weak transcription	Brain Substantia Nigra	brain
9	chr19:36250200-36255200	Weak transcription	Primary B cells from cord blood	blood
10	chr19:36250200-36265400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr19:36250400-36255000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr19:36250400-36260200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr19:36250400-36265400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr19:36250400-36265600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr19:36250400-36265600	Weak transcription	Psoas Muscle	Psoas
16	chr19:36250400-36265800	Weak transcription	Small Intestine	intestine
17	chr19:36250400-36266000	Weak transcription	Aorta	Aorta
18	chr19:36250600-36254800	Weak transcription	Right Ventricle	heart
19	chr19:36250600-36255000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr19:36250600-36257400	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr19:36250600-36258400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr19:36250600-36258400	Strong transcription	Fetal Intestine Small	intestine
23	chr19:36250600-36265400	Weak transcription	Stomach Mucosa	stomach
24	chr19:36250800-36254200	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr19:36250800-36255000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:36250800-36255800	Weak transcription	HepG2	liver
27	chr19:36250800-36256000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:36250800-36257600	Strong transcription	Fetal Intestine Large	intestine
29	chr19:36250800-36265400	Weak transcription	Brain Angular Gyrus	brain
30	chr19:36250800-36265600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr19:36251000-36255000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr19:36251000-36257000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr19:36251000-36257600	Strong transcription	Primary T cells from cord blood	blood
34	chr19:36251000-36257600	Strong transcription	Fetal Muscle Leg	muscle
35	chr19:36251000-36258400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr19:36251000-36258400	Strong transcription	Fetal Stomach	stomach
37	chr19:36251000-36260000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr19:36251000-36260200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr19:36251000-36260200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr19:36251000-36263800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr19:36251000-36265600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr19:36251000-36265600	Weak transcription	Fetal Brain Male	brain
43	chr19:36251000-36265800	Weak transcription	HUVEC	blood vessel
44	chr19:36251000-36266000	Weak transcription	HSMM	muscle
45	chr19:36251200-36253800	Strong transcription	Brain Anterior Caudate	brain
46	chr19:36251200-36254200	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr19:36251200-36256400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr19:36251200-36257000	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr19:36251200-36260200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr19:36251400-36257000	Strong transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links