Variant report

Variant	rs72570374
Chromosome Location	chr6:151092868-151092869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11968895	0.85[EUR][1000 genomes]
rs12664155	0.87[EUR][1000 genomes]
rs17080238	0.89[EUR][1000 genomes]
rs1968998	0.90[EUR][1000 genomes]
rs3734411	0.92[EUR][1000 genomes]
rs4869693	0.82[EUR][1000 genomes]
rs72570349	0.84[EUR][1000 genomes]
rs72570350	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
2	chr6:151075200-151093600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:151075600-151094400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:151080600-151094200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:151085800-151093800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:151086000-151097800	Weak transcription	Lung	lung
7	chr6:151086000-151098000	Weak transcription	Liver	Liver
8	chr6:151086000-151098000	Weak transcription	Spleen	Spleen
9	chr6:151086000-151121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:151087600-151109200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:151088200-151096600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:151088200-151121400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:151088600-151094200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:151088800-151093800	Weak transcription	GM12878-XiMat	blood
15	chr6:151089000-151094400	Strong transcription	Fetal Thymus	thymus
16	chr6:151089000-151096200	Weak transcription	HMEC	breast
17	chr6:151089000-151097000	Weak transcription	Ovary	ovary
18	chr6:151089000-151098000	Weak transcription	Esophagus	oesophagus
19	chr6:151089000-151105200	Weak transcription	Left Ventricle	heart
20	chr6:151089000-151109800	Weak transcription	Fetal Brain Male	brain
21	chr6:151089200-151093200	Weak transcription	Brain Anterior Caudate	brain
22	chr6:151089200-151094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:151089200-151094400	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:151089200-151095200	Weak transcription	Adipose Nuclei	Adipose
25	chr6:151089400-151093000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:151089400-151094000	Strong transcription	Thymus	Thymus
27	chr6:151089400-151096600	Weak transcription	NH-A	brain
28	chr6:151089600-151093000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:151089600-151094000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr6:151089800-151096600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:151090200-151093200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:151090200-151093600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:151090200-151095200	Weak transcription	Fetal Lung	lung
34	chr6:151090200-151098000	Weak transcription	Fetal Kidney	kidney
35	chr6:151091000-151125800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:151091200-151093000	Enhancers	Fetal Heart	heart
37	chr6:151091200-151094600	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:151091400-151099000	Weak transcription	Placenta	Placenta
39	chr6:151092200-151093000	Weak transcription	Primary B cells from cord blood	blood
40	chr6:151092200-151094400	Weak transcription	Fetal Stomach	stomach
41	chr6:151092200-151095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:151092200-151097800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:151092800-151096600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links