Variant report

Variant	rs7257664
Chromosome Location	chr19:56858147-56858148
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11667517	1.00[ASN][1000 genomes]
rs11671109	1.00[ASN][1000 genomes]
rs11671946	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11672540	1.00[ASN][1000 genomes]
rs2869161	1.00[ASN][1000 genomes]
rs35626174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55757636	1.00[ASN][1000 genomes]
rs56374537	1.00[ASN][1000 genomes]
rs66528019	1.00[ASN][1000 genomes]
rs66827723	1.00[ASN][1000 genomes]
rs7246987	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7248134	0.94[EUR][1000 genomes]
rs7256716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7260439	1.00[ASN][1000 genomes]
rs73052169	1.00[ASN][1000 genomes]
rs73052170	1.00[ASN][1000 genomes]
rs73052176	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73052195	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8103677	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
2	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
5	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	esv1837760	chr19:56850795-56877187	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv580357	chr19:56850949-56869794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv580358	chr19:56851001-56869794	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56854200-56863200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr19:56855000-56870200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr19:56856600-56859600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr19:56857600-56859200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr19:56857600-56859600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:56857800-56859200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr19:56857800-56859200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr19:56857800-56859200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr19:56857800-56859400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr19:56858000-56858400	Enhancers	K562	blood
11	chr19:56858000-56859200	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links