Variant report

Variant	rs72613843
Chromosome Location	chr2:30940071-30940072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30939229..30940187-chr2:31084587..31085851,3	MCF-7	breast:
2	chr2:30939067..30940072-chr2:31084665..31085609,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11887038	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1879277	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1879278	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1879279	0.98[ASN][1000 genomes]
rs2602779	1.00[AFR][1000 genomes]
rs35725406	1.00[AFR][1000 genomes]
rs60218907	0.84[EUR][1000 genomes]
rs60432407	0.84[EUR][1000 genomes]
rs68064015	0.84[EUR][1000 genomes]
rs72613836	0.84[EUR][1000 genomes]
rs72613839	0.84[EUR][1000 genomes]
rs72613840	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613841	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613842	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613844	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613845	0.98[ASN][1000 genomes]
rs72613846	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613847	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613848	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613849	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613850	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613851	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613852	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613853	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613854	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613855	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613856	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613857	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613858	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613859	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613860	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613861	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613862	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7607943	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30938400-30946000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:30939000-30940600	Enhancers	Stomach Mucosa	stomach
4	chr2:30939200-30940200	Weak transcription	Pancreas	Pancrea
5	chr2:30940000-30944000	Weak transcription	Fetal Intestine Small	intestine

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