Variant report

Variant	rs72613841
Chromosome Location	chr2:30937476-30937477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:30936769..30937624-chr2:31255661..31256507,2	MCF-7	breast:
2	chr2:30936982..30937647-chr2:31105727..31106375,2	MCF-7	breast:
3	chr2:30936961..30937589-chr2:31556145..31556832,2	MCF-7	breast:
4	chr2:30936579..30938213-chr2:31202320..31202998,6	MCF-7	breast:
5	chr2:30936415..30937726-chr2:31084465..31085638,7	K562	blood:
6	chr2:30937140..30937644-chr2:31393091..31393610,2	MCF-7	breast:
7	chr2:30937079..30937582-chr2:31749126..31749701,2	K562	blood:
8	chr2:30937017..30937537-chr2:31556075..31557040,2	K562	blood:
9	chr2:30936638..30937640-chr2:31555613..31556720,3	MCF-7	breast:
10	chr2:30936811..30938082-chr2:31084553..31085426,8	MCF-7	breast:
11	chr2:30936771..30937617-chr2:31085001..31085651,3	MCF-7	breast:
12	chr2:30937011..30937606-chr2:31255684..31256205,2	MCF-7	breast:
13	chr2:30936651..30937573-chr2:31138045..31139090,6	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LCLAT1-3	chr2:30936367-30938367	NONHSAT069917

No data

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11887038	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17010034	0.85[EUR][1000 genomes]
rs1879277	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1879278	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1879279	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60218907	0.92[EUR][1000 genomes]
rs60432407	0.92[EUR][1000 genomes]
rs66649138	0.85[EUR][1000 genomes]
rs67680703	0.85[EUR][1000 genomes]
rs67748367	0.85[EUR][1000 genomes]
rs68014179	0.85[EUR][1000 genomes]
rs68064015	0.92[EUR][1000 genomes]
rs72613838	0.85[EUR][1000 genomes]
rs72613840	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613842	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613843	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613844	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613845	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613846	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613847	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613848	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613849	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613850	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613851	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613852	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613853	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613854	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613855	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613856	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613857	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613858	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613859	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613860	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613861	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613862	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72865470	0.85[EUR][1000 genomes]
rs7607943	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30932200-30937600	Weak transcription	NHDF-Ad	bronchial
3	chr2:30934800-30938400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:30934800-30938400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr2:30935800-30938400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr2:30936400-30937600	Enhancers	Fetal Thymus	thymus
7	chr2:30936600-30937600	Enhancers	Dnd41	blood
8	chr2:30936600-30938400	Enhancers	GM12878-XiMat	blood
9	chr2:30936800-30937600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr2:30936800-30938200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:30936800-30938400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:30937000-30937800	Weak transcription	Osteobl	bone
13	chr2:30937200-30937600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:30937200-30937800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:30937200-30938000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:30937200-30938400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:30937200-30939000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr2:30937200-30939000	Weak transcription	Stomach Mucosa	stomach

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