Variant report

Variant	rs67680703
Chromosome Location	chr2:30921067-30921068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17010034	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1879277	0.85[EUR][1000 genomes]
rs1879278	0.85[EUR][1000 genomes]
rs55968228	0.84[AFR][1000 genomes]
rs60218907	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60432407	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61473948	0.94[ASN][1000 genomes]
rs66649138	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67748367	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68014179	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68064015	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613836	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72613837	0.88[ASN][1000 genomes]
rs72613838	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72613839	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72613840	0.85[EUR][1000 genomes]
rs72613841	0.85[EUR][1000 genomes]
rs72613842	0.85[EUR][1000 genomes]
rs72613844	0.85[EUR][1000 genomes]
rs72613846	0.85[EUR][1000 genomes]
rs72613847	0.85[EUR][1000 genomes]
rs72613848	0.85[EUR][1000 genomes]
rs72613849	0.85[EUR][1000 genomes]
rs72613850	0.85[EUR][1000 genomes]
rs72613851	0.85[EUR][1000 genomes]
rs72613852	0.85[EUR][1000 genomes]
rs72613853	0.85[EUR][1000 genomes]
rs72613854	0.85[EUR][1000 genomes]
rs72613855	0.85[EUR][1000 genomes]
rs72613856	0.85[EUR][1000 genomes]
rs72613857	0.85[EUR][1000 genomes]
rs72613858	0.85[EUR][1000 genomes]
rs72613859	0.85[EUR][1000 genomes]
rs72613860	0.85[EUR][1000 genomes]
rs72613861	0.85[EUR][1000 genomes]
rs72865470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7607943	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv32718	chr2:30918546-30926192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30918600-30925000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links