Variant report

Variant	rs72613840
Chromosome Location	chr2:30936083-30936084
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11887038	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17010034	0.85[EUR][1000 genomes]
rs1879277	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1879278	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1879279	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60218907	0.92[EUR][1000 genomes]
rs60432407	0.92[EUR][1000 genomes]
rs66649138	0.85[EUR][1000 genomes]
rs67680703	0.85[EUR][1000 genomes]
rs67748367	0.85[EUR][1000 genomes]
rs68014179	0.85[EUR][1000 genomes]
rs68064015	0.92[EUR][1000 genomes]
rs72613838	0.85[EUR][1000 genomes]
rs72613841	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613842	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613843	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613844	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613845	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613846	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613847	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613848	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613849	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613850	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613851	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613852	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613853	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613854	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613855	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613856	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613857	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613858	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613859	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613860	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613861	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613862	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72865470	0.85[EUR][1000 genomes]
rs7607943	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30930000-30936800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:30930000-30936800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:30930000-30936800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:30930000-30936800	Weak transcription	Osteobl	bone
6	chr2:30932000-30937200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:30932200-30937600	Weak transcription	NHDF-Ad	bronchial
8	chr2:30933200-30936800	Weak transcription	Fetal Heart	heart
9	chr2:30934400-30937200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr2:30934800-30936600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr2:30934800-30938400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr2:30934800-30938400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr2:30935000-30936800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:30935000-30936800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr2:30935800-30937400	Enhancers	Primary B cells from cord blood	blood
16	chr2:30935800-30938400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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