Variant report

Variant	rs68014179
Chromosome Location	chr2:30925192-30925193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30923468..30926529-chr2:30927694..30930292,3	MCF-7	breast:
2	chr2:30409571..30411186-chr2:30923671..30925648,2	K562	blood:

Variant related genes	Relation type
ENSG00000207187	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17010034	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1879277	0.85[EUR][1000 genomes]
rs1879278	0.85[EUR][1000 genomes]
rs60218907	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60432407	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61473948	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66649138	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67680703	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67748367	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68064015	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613836	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72613837	0.86[ASN][1000 genomes]
rs72613838	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72613839	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72613840	0.85[EUR][1000 genomes]
rs72613841	0.85[EUR][1000 genomes]
rs72613842	0.85[EUR][1000 genomes]
rs72613844	0.85[EUR][1000 genomes]
rs72613846	0.85[EUR][1000 genomes]
rs72613847	0.85[EUR][1000 genomes]
rs72613848	0.85[EUR][1000 genomes]
rs72613849	0.85[EUR][1000 genomes]
rs72613850	0.85[EUR][1000 genomes]
rs72613851	0.85[EUR][1000 genomes]
rs72613852	0.85[EUR][1000 genomes]
rs72613853	0.85[EUR][1000 genomes]
rs72613854	0.85[EUR][1000 genomes]
rs72613855	0.85[EUR][1000 genomes]
rs72613856	0.85[EUR][1000 genomes]
rs72613857	0.85[EUR][1000 genomes]
rs72613858	0.85[EUR][1000 genomes]
rs72613859	0.85[EUR][1000 genomes]
rs72613860	0.85[EUR][1000 genomes]
rs72613861	0.85[EUR][1000 genomes]
rs72865470	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7607943	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv32718	chr2:30918546-30926192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30923600-30926200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:30924800-30925600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr2:30924800-30925600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr2:30925000-30925400	Active TSS	Fetal Heart	heart

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