Variant report

Variant	rs72614717
Chromosome Location	chr4:62165803-62165804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11131323	0.82[ASN][1000 genomes]
rs11727024	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17291864	0.81[ASN][1000 genomes]
rs72614716	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72614718	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614719	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614720	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614721	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614722	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72614723	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614724	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614726	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614727	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614728	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72614729	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72614730	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72614732	0.92[ASN][1000 genomes]
rs72614733	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62158600-62169600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:62159000-62167200	Weak transcription	Brain Substantia Nigra	brain
3	chr4:62159000-62169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:62160200-62168000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:62160600-62169000	Weak transcription	Brain Angular Gyrus	brain
7	chr4:62160800-62167000	Weak transcription	Fetal Lung	lung
8	chr4:62162000-62167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:62162200-62169000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:62162200-62171400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:62164200-62171200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr4:62164800-62167000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:62164800-62167000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:62165200-62169000	Weak transcription	Brain Anterior Caudate	brain
15	chr4:62165200-62169600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr4:62165400-62166200	Weak transcription	Fetal Brain Male	brain
17	chr4:62165400-62169800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:62165600-62167800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:62165800-62166400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links