Variant report

Variant	rs17291864
Chromosome Location	chr4:62167413-62167414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10032294	0.86[EUR][1000 genomes]
rs1032896	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11131323	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1116862	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28692726	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2880363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4146017	0.86[EUR][1000 genomes]
rs6551624	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6822041	0.83[EUR][1000 genomes]
rs6825441	0.86[EUR][1000 genomes]
rs72614717	0.81[ASN][1000 genomes]
rs7685747	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9631772	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9685679	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9995784	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62158600-62169600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:62159000-62169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:62160200-62168000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:62160600-62169000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:62162200-62169000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:62162200-62171400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:62164200-62171200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:62165200-62169000	Weak transcription	Brain Anterior Caudate	brain
10	chr4:62165200-62169600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:62165400-62169800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:62165600-62167800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:62166200-62168000	Enhancers	Fetal Brain Male	brain
14	chr4:62166400-62171400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:62167000-62167600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:62167000-62168000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:62167000-62170600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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