Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10032294	0.85[EUR][1000 genomes]
rs1032896	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11131323	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1116862	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11727024	0.82[ASN][1000 genomes]
rs17291864	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28692726	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2880363	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146017	0.85[EUR][1000 genomes]
rs6551624	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6822041	0.82[EUR][1000 genomes]
rs6825441	0.85[EUR][1000 genomes]
rs72614718	0.82[ASN][1000 genomes]
rs72614719	0.82[ASN][1000 genomes]
rs72614720	0.82[ASN][1000 genomes]
rs72614721	0.82[ASN][1000 genomes]
rs72614723	0.82[ASN][1000 genomes]
rs72614724	0.82[ASN][1000 genomes]
rs72614726	0.82[ASN][1000 genomes]
rs72614727	0.82[ASN][1000 genomes]
rs72614728	0.81[ASN][1000 genomes]
rs72614729	0.81[ASN][1000 genomes]
rs72614730	0.81[ASN][1000 genomes]
rs7685747	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9685679	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9995784	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:62169800-62173200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:62170000-62173600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:62170400-62173400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:62171200-62175200	Weak transcription	Fetal Brain Male	brain
6	chr4:62171800-62175400	Weak transcription	H9 Cell Line	embryonic stem cell

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