Variant report

Variant	rs10032294
Chromosome Location	chr4:62208968-62208969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1032896	0.83[CHD][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.85[EUR][1000 genomes]
rs11131323	0.89[EUR][1000 genomes]
rs1116862	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17238968	0.86[YRI][hapmap]
rs17291864	0.86[EUR][1000 genomes]
rs17828324	0.82[CEU][hapmap]
rs28692726	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2880363	0.88[CHD][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.85[EUR][1000 genomes]
rs4146017	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4860091	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap]
rs55904225	0.92[ASN][1000 genomes]
rs6551624	0.92[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6822041	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6825441	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7685747	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9631772	0.85[EUR][1000 genomes]
rs9685679	0.86[CHD][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs9995784	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10032294	TUB	trans	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62203200-62209000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:62203400-62210000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:62203600-62209600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:62203600-62209600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:62203600-62209600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:62203600-62211800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:62204200-62209000	Weak transcription	Fetal Brain Male	brain
8	chr4:62206000-62209800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:62208000-62210200	Enhancers	Fetal Lung	lung
10	chr4:62208200-62209200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:62208200-62209200	Enhancers	Fetal Stomach	stomach
12	chr4:62208200-62210400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:62208400-62210000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:62208600-62209000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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