Variant report

Variant	rs4860091
Chromosome Location	chr4:62216995-62216996
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10032294	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1032896	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs11131323	0.85[EUR][1000 genomes]
rs1116862	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17238968	0.93[YRI][hapmap]
rs17291864	0.82[EUR][1000 genomes]
rs17828324	0.88[CEU][hapmap]
rs28692726	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2880363	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs4146017	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55904225	0.90[ASN][1000 genomes]
rs6551624	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6822041	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6825441	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7685747	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9631772	0.82[EUR][1000 genomes]
rs9685679	0.82[EUR][1000 genomes]
rs9995784	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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