Variant report

Variant	rs11131323
Chromosome Location	chr4:62187436-62187437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10032294	0.89[EUR][1000 genomes]
rs1032896	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1116862	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11727024	0.86[ASN][1000 genomes]
rs17291864	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28692726	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2880363	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4146017	0.89[EUR][1000 genomes]
rs6551624	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6822041	0.86[EUR][1000 genomes]
rs6825441	0.89[EUR][1000 genomes]
rs72614716	0.81[ASN][1000 genomes]
rs72614717	0.82[ASN][1000 genomes]
rs72614718	0.86[ASN][1000 genomes]
rs72614719	0.86[ASN][1000 genomes]
rs72614720	0.86[ASN][1000 genomes]
rs72614721	0.86[ASN][1000 genomes]
rs72614722	0.83[ASN][1000 genomes]
rs72614723	0.86[ASN][1000 genomes]
rs72614724	0.86[ASN][1000 genomes]
rs72614726	0.86[ASN][1000 genomes]
rs72614727	0.86[ASN][1000 genomes]
rs72614728	0.87[ASN][1000 genomes]
rs72614729	0.87[ASN][1000 genomes]
rs72614730	0.87[ASN][1000 genomes]
rs72614732	0.85[ASN][1000 genomes]
rs72614733	0.80[ASN][1000 genomes]
rs7685747	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9631772	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9685679	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9995784	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62175600-62188400	Weak transcription	Aorta	Aorta
2	chr4:62184400-62188400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:62185400-62188200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62186400-62188400	Weak transcription	Fetal Stomach	stomach
5	chr4:62186600-62188000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:62186600-62188000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:62186600-62202800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:62186800-62189800	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links