Variant report

Variant	rs1116862
Chromosome Location	chr4:62186410-62186411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10032294	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1032896	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11131323	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11727024	0.81[ASN][1000 genomes]
rs17291864	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28692726	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2880363	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4146017	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6551624	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6822041	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6825441	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72614718	0.81[ASN][1000 genomes]
rs72614719	0.81[ASN][1000 genomes]
rs72614720	0.81[ASN][1000 genomes]
rs72614721	0.81[ASN][1000 genomes]
rs72614723	0.81[ASN][1000 genomes]
rs72614724	0.81[ASN][1000 genomes]
rs72614726	0.81[ASN][1000 genomes]
rs72614727	0.81[ASN][1000 genomes]
rs72614728	0.82[ASN][1000 genomes]
rs72614729	0.82[ASN][1000 genomes]
rs72614730	0.82[ASN][1000 genomes]
rs72614732	0.80[ASN][1000 genomes]
rs7685747	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9631772	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9685679	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9995784	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62175600-62188400	Weak transcription	Aorta	Aorta
2	chr4:62184400-62188400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:62185000-62186800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:62185400-62188200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:62185600-62186600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:62185600-62186600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:62185800-62187000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:62185800-62187000	Enhancers	NH-A	brain
9	chr4:62186000-62186600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:62186000-62186600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:62186000-62186800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:62186000-62186800	Enhancers	Brain Angular Gyrus	brain
13	chr4:62186000-62186800	Enhancers	Fetal Heart	heart
14	chr4:62186200-62186800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:62186200-62186800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:62186400-62187000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr4:62186400-62188400	Weak transcription	Fetal Stomach	stomach

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