Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12213780	0.89[ASN][1000 genomes]
rs1321734	0.88[ASN][1000 genomes]
rs1321735	0.89[ASN][1000 genomes]
rs1321736	0.89[ASN][1000 genomes]
rs1321737	0.87[ASN][1000 genomes]
rs1407159	0.85[ASN][1000 genomes]
rs1407160	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1407161	0.89[ASN][1000 genomes]
rs1407162	0.87[ASN][1000 genomes]
rs1407164	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1885017	0.84[ASN][1000 genomes]
rs1926019	0.88[ASN][1000 genomes]
rs2146272	0.89[ASN][1000 genomes]
rs4141965	0.89[ASN][1000 genomes]
rs6454422	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6454423	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925525	0.89[ASN][1000 genomes]
rs7741178	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7745528	0.88[ASN][1000 genomes]
rs7768040	0.89[ASN][1000 genomes]
rs7768362	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9362128	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85844400-85849800	Enhancers	NHDF-Ad	bronchial
2	chr6:85846000-85852000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:85846400-85848400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:85848200-85849400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:85848200-85853000	Weak transcription	Osteobl	bone
6	chr6:85848200-85853600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: