Variant report

Variant	rs1407159
Chromosome Location	chr6:85846086-85846087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12213780	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1321723	0.81[ASN][1000 genomes]
rs1321734	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321735	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1321736	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1321737	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1407160	0.80[ASN][1000 genomes]
rs1407161	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1407162	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1885017	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926019	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146272	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4141965	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs486470	0.81[ASN][1000 genomes]
rs505007	0.81[ASN][1000 genomes]
rs510422	0.81[ASN][1000 genomes]
rs536094	0.81[ASN][1000 genomes]
rs562034	0.81[ASN][1000 genomes]
rs563639	0.81[ASN][1000 genomes]
rs618586	0.87[CHB][hapmap]
rs6454422	0.87[ASN][1000 genomes]
rs6454423	0.87[ASN][1000 genomes]
rs6925525	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72624531	0.85[ASN][1000 genomes]
rs7745528	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7748912	0.91[CHB][hapmap]
rs7768040	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9342008	0.91[CHB][hapmap]
rs9362128	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85843000-85846800	Enhancers	Osteobl	bone
2	chr6:85844400-85849800	Enhancers	NHDF-Ad	bronchial
3	chr6:85844600-85848200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:85844800-85846400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:85845000-85846200	Enhancers	HSMMtube	muscle
6	chr6:85845200-85846800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:85845600-85846200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:85845600-85847600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:85846000-85846400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:85846000-85846400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:85846000-85846400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:85846000-85852000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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