Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12213780	0.87[ASN][1000 genomes]
rs1321734	0.90[ASN][1000 genomes]
rs1321735	0.87[ASN][1000 genomes]
rs1321736	0.87[ASN][1000 genomes]
rs1321737	0.85[ASN][1000 genomes]
rs1407159	0.87[ASN][1000 genomes]
rs1407160	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1407161	0.87[ASN][1000 genomes]
rs1407162	0.85[ASN][1000 genomes]
rs1407164	0.81[EUR][1000 genomes]
rs1885017	0.86[ASN][1000 genomes]
rs1926019	0.87[ASN][1000 genomes]
rs2146272	0.87[ASN][1000 genomes]
rs4141965	0.87[ASN][1000 genomes]
rs4707126	0.85[AFR][1000 genomes]
rs618586	0.82[CHB][hapmap]
rs6454422	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6454423	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911391	0.90[JPT][hapmap]
rs6925525	0.87[ASN][1000 genomes]
rs72624531	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7741178	0.85[EUR][1000 genomes]
rs7745528	0.87[ASN][1000 genomes]
rs7748912	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs7768040	0.87[ASN][1000 genomes]
rs7768362	0.85[EUR][1000 genomes]
rs9342008	0.87[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9362128	MRAP2	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85837600-85845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:85838800-85842600	Enhancers	Osteobl	bone
3	chr6:85840600-85842400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:85841600-85843600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:85841800-85844400	Weak transcription	NHDF-Ad	bronchial
6	chr6:85841800-85844800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:85842200-85843200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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