The 2.0 version of rSNPBase

Variant report

Variant rs72629800
Chromosome Location chr2:179390667-179390668
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:179388600-179392200 Weak transcription Spleen Spleen
2 chr2:179388800-179390800 Weak transcription Fetal Muscle Trunk muscle
3 chr2:179388800-179390800 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr2:179388800-179392400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr2:179388800-179393400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr2:179388800-179393400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr2:179388800-179395800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr2:179388800-179395800 Weak transcription Placenta Placenta
9 chr2:179388800-179395800 Weak transcription Lung lung
10 chr2:179388800-179396000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr2:179388800-179396200 Weak transcription Fetal Kidney kidney
12 chr2:179388800-179396200 Weak transcription Gastric stomach
13 chr2:179388800-179396200 Weak transcription Pancreas Pancrea
14 chr2:179388800-179403600 Weak transcription Esophagus oesophagus
15 chr2:179388800-179408000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr2:179388800-179408600 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr2:179388800-179410600 Weak transcription Colonic Mucosa Colon
18 chr2:179388800-179411800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr2:179388800-179417600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr2:179388800-179429400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr2:179388800-179441800 Weak transcription Placenta Amnion Placenta Amnion
22 chr2:179388800-179448800 Weak transcription Small Intestine intestine
23 chr2:179388800-179495800 Weak transcription ES-WA7 Cell Line embryonic stem cell
24 chr2:179389000-179391000 Weak transcription Psoas Muscle Psoas
25 chr2:179389000-179391000 Weak transcription Right Ventricle heart
26 chr2:179389000-179395400 Weak transcription Fetal Stomach stomach
27 chr2:179389000-179395600 Weak transcription Fetal Intestine Small intestine
28 chr2:179389000-179395800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr2:179389000-179395800 Weak transcription Aorta Aorta
30 chr2:179389000-179396000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr2:179389000-179396000 Weak transcription Primary T cells fromperipheralblood blood
32 chr2:179389000-179396000 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr2:179389000-179396200 Weak transcription H9 Cell Line embryonic stem cell
34 chr2:179389000-179396200 Weak transcription Brain Substantia Nigra brain
35 chr2:179389000-179396200 Weak transcription Fetal Brain Female brain
36 chr2:179389200-179395400 Weak transcription Fetal Thymus thymus
37 chr2:179389200-179396200 Weak transcription Brain Anterior Caudate brain
38 chr2:179389200-179396200 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr2:179389200-179412600 Weak transcription Pancreatic Islets Pancreatic Islet
40 chr2:179389400-179390800 Weak transcription Primary T cells from cord blood blood
41 chr2:179389400-179390800 Weak transcription HepG2 liver
42 chr2:179389400-179391000 Weak transcription Primary B cells from cord blood blood
43 chr2:179389400-179391000 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr2:179389400-179391000 Weak transcription HSMM muscle
45 chr2:179389400-179391200 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr2:179389400-179391600 Weak transcription Fetal Intestine Large intestine
47 chr2:179389400-179392000 Weak transcription Primary B cells from peripheral blood blood
48 chr2:179389400-179392000 Weak transcription Primary hematopoietic stem cells blood
49 chr2:179389400-179392200 Weak transcription Primary monocytes fromperipheralblood blood
50 chr2:179389400-179392200 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015