Variant report

Variant	rs72634733
Chromosome Location	chr4:62135541-62135542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs72633459	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72634735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72634736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72634737	1.00[EUR][1000 genomes]
rs72634739	1.00[EUR][1000 genomes]
rs72634740	1.00[EUR][1000 genomes]
rs72634744	0.95[EUR][1000 genomes]
rs72634745	1.00[EUR][1000 genomes]
rs72634746	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:62129600-62139000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:62133000-62135600	Enhancers	Brain Substantia Nigra	brain
4	chr4:62133400-62136400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:62134200-62137200	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:62134200-62138000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:62134600-62135800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:62134600-62135800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:62134600-62136000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:62134800-62136000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:62134800-62136600	Enhancers	Brain Anterior Caudate	brain
12	chr4:62135000-62135600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:62135000-62135600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:62135000-62135800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:62135000-62137000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:62135000-62138400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:62135000-62138600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:62135400-62135600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:62135400-62137000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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