Variant report

Variant	rs72634744
Chromosome Location	chr4:62158521-62158522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs72633459	0.81[EUR][1000 genomes]
rs72634733	0.95[EUR][1000 genomes]
rs72634735	0.95[EUR][1000 genomes]
rs72634736	0.95[EUR][1000 genomes]
rs72634737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72634739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72634740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72634745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72634746	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62149400-62158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:62151400-62158600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain
4	chr4:62156600-62161600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:62157400-62158600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:62158200-62159000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:62158200-62159000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:62158200-62159000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:62158400-62158600	Enhancers	Brain Cingulate Gyrus	brain
10	chr4:62158400-62159000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:62158400-62159000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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