Variant report

Variant	rs72634736
Chromosome Location	chr4:62138864-62138865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs72633459	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72634733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72634735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72634737	1.00[EUR][1000 genomes]
rs72634739	1.00[EUR][1000 genomes]
rs72634740	1.00[EUR][1000 genomes]
rs72634744	0.95[EUR][1000 genomes]
rs72634745	1.00[EUR][1000 genomes]
rs72634746	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:62129600-62139000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:62135800-62140400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:62136200-62147200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:62137000-62139000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:62137400-62139200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:62137600-62139000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:62138200-62140200	Enhancers	Primary hematopoietic stem cells	blood
10	chr4:62138400-62140000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:62138400-62141000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:62138600-62139200	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr4:62138600-62139200	Flanking Active TSS	Fetal Lung	lung
14	chr4:62138600-62139400	Enhancers	Brain Angular Gyrus	brain
15	chr4:62138600-62139400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:62138800-62139000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:62138800-62139000	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr4:62138800-62139000	Enhancers	Brain Hippocampus Middle	brain
19	chr4:62138800-62139000	Enhancers	Brain Substantia Nigra	brain
20	chr4:62138800-62139000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr4:62138800-62139200	Enhancers	Adipose Nuclei	Adipose
22	chr4:62138800-62139600	Enhancers	Primary monocytes fromperipheralblood	blood

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