Variant report

Variant	rs72640595
Chromosome Location	chr13:94152292-94152293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:94151315..94153018-chr13:94160965..94162525,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-15	chr13:94151520-94153117	NONHSAT034712

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1445276	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17234663	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17300373	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3814275	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3848058	0.86[ASN][1000 genomes]
rs3910918	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72641606	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72641623	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7317039	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7322667	0.84[AMR][1000 genomes]
rs7326571	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7987709	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7987887	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9516244	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516250	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9516251	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9516253	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9516255	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9524111	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9524112	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9524114	0.93[ASN][1000 genomes]
rs9524115	0.83[ASN][1000 genomes]
rs9524116	0.92[ASN][1000 genomes]
rs9524117	0.86[ASN][1000 genomes]
rs9524121	0.93[ASN][1000 genomes]
rs9524122	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9524123	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9524124	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9524125	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9524126	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9524127	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9556303	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9556306	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561378	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9561383	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561388	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9645881	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv562749	chr13:94083352-94263206	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv1842896	chr13:94095160-94153194	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv900921	chr13:94105666-94157481	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv900922	chr13:94105666-94281492	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94149800-94154400	Weak transcription	Fetal Brain Female	brain
2	chr13:94150000-94157800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:94151600-94152400	Enhancers	Fetal Stomach	stomach
4	chr13:94151600-94152600	Enhancers	Fetal Lung	lung
5	chr13:94151600-94153200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:94151800-94152400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:94152000-94152400	Enhancers	Colon Smooth Muscle	Colon
8	chr13:94152000-94152400	Enhancers	Fetal Kidney	kidney
9	chr13:94152000-94152600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:94152000-94152600	Active TSS	Brain Angular Gyrus	brain
11	chr13:94152000-94153000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:94152000-94153000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:94152200-94152400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr13:94152200-94152400	Flanking Active TSS	Fetal Brain Male	brain
15	chr13:94152200-94152400	Flanking Active TSS	Ovary	ovary
16	chr13:94152200-94152600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:94152200-94152600	Enhancers	Brain Germinal Matrix	brain
18	chr13:94152200-94152600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr13:94152200-94153200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:94152200-94153200	Enhancers	Fetal Heart	heart
21	chr13:94152200-94154000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr13:94152200-94160600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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