Variant report

Variant	rs9561378
Chromosome Location	chr13:94150938-94150939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1445276	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17234663	0.81[ASN][1000 genomes]
rs17300373	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72640575	0.82[EUR][1000 genomes]
rs72640595	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72641606	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72641623	0.81[ASN][1000 genomes]
rs7317039	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7326571	0.81[ASN][1000 genomes]
rs7987709	0.81[ASN][1000 genomes]
rs7987887	0.81[ASN][1000 genomes]
rs9516244	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9516250	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9516251	0.81[ASN][1000 genomes]
rs9524081	0.81[EUR][1000 genomes]
rs9524111	0.86[AMR][1000 genomes]
rs9524112	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9524114	0.81[ASN][1000 genomes]
rs9524116	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9524121	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9524122	0.81[ASN][1000 genomes]
rs9524123	0.81[ASN][1000 genomes]
rs9556303	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9556306	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9561354	0.81[EUR][1000 genomes]
rs9561358	0.81[EUR][1000 genomes]
rs9561359	0.83[EUR][1000 genomes]
rs9561360	0.83[EUR][1000 genomes]
rs9561377	0.87[ASN][1000 genomes]
rs9561383	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9561388	0.81[ASN][1000 genomes]
rs9645881	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv562749	chr13:94083352-94263206	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900920	chr13:94088707-94151937	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv1842896	chr13:94095160-94153194	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv900921	chr13:94105666-94157481	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv900922	chr13:94105666-94281492	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94149400-94152200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:94149600-94151600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr13:94149600-94151600	Weak transcription	Fetal Stomach	stomach
4	chr13:94149600-94152000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:94149600-94152200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:94149600-94152200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:94149800-94151800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:94149800-94151800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:94149800-94154400	Weak transcription	Fetal Brain Female	brain
10	chr13:94150000-94151600	Weak transcription	Fetal Lung	lung
11	chr13:94150000-94152000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr13:94150000-94157800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:94150200-94152200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr13:94150200-94152200	Weak transcription	Fetal Heart	heart
15	chr13:94150400-94152000	Weak transcription	Fetal Brain Male	brain

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