Variant report

Variant	rs72643221
Chromosome Location	chr13:92307833-92307834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:92301398..92304289-chr13:92305858..92307889,2	K562	blood:
2	chr13:92306622..92308651-chr13:92311671..92313679,2	K562	blood:
3	chr13:92302789..92304605-chr13:92305395..92308215,3	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10219980	0.87[ASN][1000 genomes]
rs10492611	0.90[ASN][1000 genomes]
rs11616549	0.89[ASN][1000 genomes]
rs11619422	0.90[ASN][1000 genomes]
rs11841822	0.90[ASN][1000 genomes]
rs11843202	0.90[ASN][1000 genomes]
rs11843298	0.90[ASN][1000 genomes]
rs1326742	0.90[ASN][1000 genomes]
rs1348663	0.89[ASN][1000 genomes]
rs1365874	0.90[ASN][1000 genomes]
rs1365875	0.90[ASN][1000 genomes]
rs1373863	0.82[ASN][1000 genomes]
rs1409600	0.90[ASN][1000 genomes]
rs1409602	0.90[ASN][1000 genomes]
rs1409603	0.90[ASN][1000 genomes]
rs1412311	0.90[ASN][1000 genomes]
rs1412312	0.90[ASN][1000 genomes]
rs1584154	0.90[ASN][1000 genomes]
rs16946366	0.89[ASN][1000 genomes]
rs16946369	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16946409	0.89[ASN][1000 genomes]
rs16946412	0.89[ASN][1000 genomes]
rs16946426	0.90[ASN][1000 genomes]
rs16946431	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16946433	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16946459	0.90[ASN][1000 genomes]
rs1822915	0.90[ASN][1000 genomes]
rs1822916	0.90[ASN][1000 genomes]
rs1831567	0.90[ASN][1000 genomes]
rs1831568	0.90[ASN][1000 genomes]
rs1926658	0.90[ASN][1000 genomes]
rs1926659	0.89[ASN][1000 genomes]
rs2148530	0.89[ASN][1000 genomes]
rs2209653	0.89[ASN][1000 genomes]
rs2882822	0.90[ASN][1000 genomes]
rs3852115	0.87[ASN][1000 genomes]
rs3852116	0.90[ASN][1000 genomes]
rs3864178	0.90[ASN][1000 genomes]
rs3906488	0.90[ASN][1000 genomes]
rs4773643	0.86[ASN][1000 genomes]
rs4773644	0.86[EUR][1000 genomes]
rs55924226	0.88[ASN][1000 genomes]
rs57341317	0.89[ASN][1000 genomes]
rs58166883	0.89[ASN][1000 genomes]
rs60635585	0.90[ASN][1000 genomes]
rs60790837	0.90[ASN][1000 genomes]
rs6492560	0.90[ASN][1000 genomes]
rs72643211	0.82[ASN][1000 genomes]
rs72643220	0.89[ASN][1000 genomes]
rs72643223	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72643226	0.90[ASN][1000 genomes]
rs72643228	0.90[ASN][1000 genomes]
rs72643254	0.93[EUR][1000 genomes]
rs7321165	0.90[ASN][1000 genomes]
rs7322883	0.89[ASN][1000 genomes]
rs7324760	0.89[ASN][1000 genomes]
rs7337822	0.90[ASN][1000 genomes]
rs7338975	0.83[EUR][1000 genomes]
rs7986797	0.88[EUR][1000 genomes]
rs7988059	0.84[EUR][1000 genomes]
rs7988707	0.84[EUR][1000 genomes]
rs7991243	0.88[EUR][1000 genomes]
rs914557	0.90[ASN][1000 genomes]
rs9556110	0.86[EUR][1000 genomes]
rs9556111	0.86[EUR][1000 genomes]
rs9560840	0.86[EUR][1000 genomes]
rs9583950	0.89[ASN][1000 genomes]
rs9583952	0.90[ASN][1000 genomes]
rs9589322	0.87[ASN][1000 genomes]
rs9589323	0.89[ASN][1000 genomes]
rs9589324	0.89[ASN][1000 genomes]
rs9589326	0.90[ASN][1000 genomes]
rs9589327	0.90[ASN][1000 genomes]
rs9652104	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1040709	chr13:92173603-92318362	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92307200-92314400	Weak transcription	Hela-S3	cervix

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