Variant report

Variant	rs72643254
Chromosome Location	chr13:92340799-92340800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92338961..92341299-chr13:92468919..92471382,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs163728	0.88[ASN][1000 genomes]
rs163926	0.97[ASN][1000 genomes]
rs163929	0.86[ASN][1000 genomes]
rs163930	0.85[ASN][1000 genomes]
rs168216	0.91[ASN][1000 genomes]
rs16946369	0.93[EUR][1000 genomes]
rs182924	0.96[ASN][1000 genomes]
rs191479	0.94[ASN][1000 genomes]
rs342670	0.93[ASN][1000 genomes]
rs342671	0.97[ASN][1000 genomes]
rs342674	0.97[ASN][1000 genomes]
rs342675	0.97[ASN][1000 genomes]
rs342676	0.97[ASN][1000 genomes]
rs342678	0.86[ASN][1000 genomes]
rs342679	0.86[ASN][1000 genomes]
rs342683	0.91[ASN][1000 genomes]
rs342684	0.95[ASN][1000 genomes]
rs342685	0.95[ASN][1000 genomes]
rs342686	0.95[ASN][1000 genomes]
rs345435	0.97[ASN][1000 genomes]
rs429039	0.88[ASN][1000 genomes]
rs435417	0.88[ASN][1000 genomes]
rs457538	0.88[ASN][1000 genomes]
rs461810	0.87[ASN][1000 genomes]
rs466165	0.88[ASN][1000 genomes]
rs4773644	0.89[EUR][1000 genomes]
rs523428	0.97[ASN][1000 genomes]
rs536822	0.97[ASN][1000 genomes]
rs553717	0.86[ASN][1000 genomes]
rs554857	0.86[ASN][1000 genomes]
rs560759	0.86[ASN][1000 genomes]
rs72643221	0.93[EUR][1000 genomes]
rs7338975	0.86[EUR][1000 genomes]
rs7986797	0.91[EUR][1000 genomes]
rs7988059	0.88[EUR][1000 genomes]
rs7988707	0.88[EUR][1000 genomes]
rs7991243	0.91[EUR][1000 genomes]
rs9556110	0.89[EUR][1000 genomes]
rs9556111	0.89[EUR][1000 genomes]
rs9560840	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3446719	chr13:92340551-92342699	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92336000-92347400	Weak transcription	Hela-S3	cervix

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