Variant report

Variant	rs342670
Chromosome Location	chr13:92335293-92335294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92008502..92010275-chr13:92333349..92335396,2	K562	blood:
2	chr13:92327481..92330243-chr13:92333839..92336143,4	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs163728	0.88[ASN][1000 genomes]
rs163926	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs163929	0.86[ASN][1000 genomes]
rs163930	0.85[ASN][1000 genomes]
rs163932	0.89[JPT][hapmap]
rs163933	0.89[JPT][hapmap]
rs168216	0.91[ASN][1000 genomes]
rs182924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs191479	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs342671	0.97[ASN][1000 genomes]
rs342674	0.97[ASN][1000 genomes]
rs342675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs342676	0.97[ASN][1000 genomes]
rs342678	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs342679	0.86[ASN][1000 genomes]
rs342682	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs342683	0.91[ASN][1000 genomes]
rs342684	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs342685	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs342686	0.95[ASN][1000 genomes]
rs345435	0.97[ASN][1000 genomes]
rs393695	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs429039	0.88[ASN][1000 genomes]
rs435417	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs457538	0.88[ASN][1000 genomes]
rs460929	0.89[JPT][hapmap]
rs461810	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs466165	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4773644	0.84[JPT][hapmap]
rs516860	0.90[JPT][hapmap]
rs523428	0.97[ASN][1000 genomes]
rs536822	0.97[ASN][1000 genomes]
rs553717	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs554857	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs560759	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs72643254	0.93[ASN][1000 genomes]
rs7338975	0.84[JPT][hapmap]
rs7986332	0.84[JPT][hapmap]
rs7986797	0.84[JPT][hapmap]
rs7988059	0.89[JPT][hapmap]
rs7991243	0.85[JPT][hapmap]
rs9556110	0.85[JPT][hapmap]
rs9556111	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92335200-92335800	Enhancers	Brain Germinal Matrix	brain

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