Variant report
Variant | rs163933 |
---|---|
Chromosome Location | chr13:92361833-92361834 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:92360673..92364481-chr13:92372533..92375475,4 | K562 | blood: | |
2 | chr13:92011441..92013095-chr13:92360368..92362674,2 | K562 | blood: | |
3 | chr13:92003420..92005898-chr13:92360065..92363004,2 | K562 | blood: | |
4 | chr13:92360463..92365110-chr13:92381034..92383845,4 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000215417 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10492611 | 0.82[CEU][hapmap] |
rs11841822 | 0.82[CEU][hapmap] |
rs11843168 | 0.82[CEU][hapmap] |
rs11843202 | 0.82[CEU][hapmap] |
rs1326742 | 0.82[CEU][hapmap] |
rs1365874 | 0.81[CEU][hapmap] |
rs1365875 | 0.82[CEU][hapmap] |
rs1409600 | 0.82[CEU][hapmap] |
rs1409602 | 0.80[CEU][hapmap] |
rs1409603 | 0.82[CEU][hapmap] |
rs1412312 | 0.81[CEU][hapmap] |
rs163932 | 0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16946412 | 0.82[CEU][hapmap] |
rs16946426 | 0.82[CEU][hapmap] |
rs1822915 | 0.82[CEU][hapmap] |
rs1822916 | 0.82[CEU][hapmap] |
rs182924 | 0.87[CEU][hapmap];0.89[JPT][hapmap] |
rs182925 | 0.85[EUR][1000 genomes] |
rs1831567 | 0.82[CEU][hapmap] |
rs184661 | 0.82[EUR][1000 genomes] |
rs191479 | 0.87[CEU][hapmap];0.84[JPT][hapmap] |
rs191480 | 0.93[CEU][hapmap];0.83[EUR][1000 genomes] |
rs2882822 | 0.82[CEU][hapmap] |
rs342670 | 0.89[JPT][hapmap] |
rs342675 | 0.87[CEU][hapmap];0.89[JPT][hapmap] |
rs342677 | 0.93[CEU][hapmap] |
rs342678 | 0.94[JPT][hapmap] |
rs342682 | 0.87[CEU][hapmap];0.89[JPT][hapmap] |
rs342684 | 0.87[CEU][hapmap];0.84[JPT][hapmap] |
rs342685 | 0.86[CEU][hapmap];0.88[JPT][hapmap] |
rs342692 | 0.84[EUR][1000 genomes] |
rs342693 | 0.93[CEU][hapmap];0.84[TSI][hapmap] |
rs342694 | 0.93[CEU][hapmap] |
rs342695 | 0.91[CEU][hapmap] |
rs393695 | 0.87[CEU][hapmap];0.89[JPT][hapmap] |
rs435417 | 0.87[CEU][hapmap];0.89[JPT][hapmap] |
rs460929 | 0.94[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs461810 | 0.87[CEU][hapmap];0.89[JPT][hapmap] |
rs463579 | 0.96[ASN][1000 genomes] |
rs466165 | 0.89[JPT][hapmap] |
rs4773644 | 0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
rs516860 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs532989 | 0.92[CEU][hapmap];0.82[EUR][1000 genomes] |
rs538673 | 0.93[CEU][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap] |
rs553717 | 0.89[JPT][hapmap] |
rs554857 | 0.82[CEU][hapmap];0.84[JPT][hapmap] |
rs560759 | 0.87[CEU][hapmap];0.89[JPT][hapmap] |
rs7337822 | 0.82[CEU][hapmap] |
rs7338975 | 0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.95[ASN][1000 genomes] |
rs746612 | 0.82[CEU][hapmap] |
rs7986332 | 0.88[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap] |
rs7986797 | 0.88[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
rs7988059 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes] |
rs7988707 | 0.91[ASN][1000 genomes] |
rs7991243 | 0.88[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
rs914557 | 0.82[CEU][hapmap] |
rs9556110 | 0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
rs9556111 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs9560840 | 0.89[ASN][1000 genomes] |
rs9589322 | 0.82[CEU][hapmap] |
rs9589323 | 0.81[CEU][hapmap] |
rs9589324 | 0.82[CEU][hapmap] |
rs9589327 | 0.82[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1042947 | chr13:91571040-92416897 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1946 gene(s) | inside rSNPs | diseases |
2 | nsv541871 | chr13:91571040-92416897 | Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1946 gene(s) | inside rSNPs | diseases |
3 | nsv1049382 | chr13:92024240-92521180 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv541873 | chr13:92024240-92521180 | Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | esv2753383 | chr13:92226599-92462699 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
6 | nsv529268 | chr13:92267310-92531263 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | esv3441334 | chr13:92358169-92369953 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:92360600-92362400 | Enhancers | Rectal Mucosa Donor 31 | rectum |
2 | chr13:92361000-92362000 | Weak transcription | Sigmoid Colon | Sigmoid Colon |