Variant report

Variant	rs342678
Chromosome Location	chr13:92347266-92347267
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10492611	0.81[CEU][hapmap]
rs11841822	0.81[CEU][hapmap]
rs11843168	0.81[CEU][hapmap]
rs11843202	0.81[CEU][hapmap]
rs1326742	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1365874	0.81[CEU][hapmap]
rs1365875	0.81[CEU][hapmap]
rs1409600	0.81[CEU][hapmap]
rs1409602	0.86[CEU][hapmap]
rs1409603	0.81[CEU][hapmap]
rs1412311	0.81[EUR][1000 genomes]
rs1412312	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs163728	0.83[ASN][1000 genomes]
rs163926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs163929	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163930	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs163932	0.85[CEU][hapmap];0.94[JPT][hapmap]
rs163933	0.94[JPT][hapmap]
rs168216	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16946412	0.81[CEU][hapmap]
rs16946426	0.81[CEU][hapmap]
rs1822915	0.81[CEU][hapmap]
rs1822916	0.81[CEU][hapmap]
rs182924	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1831567	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1831568	0.81[EUR][1000 genomes]
rs191479	0.87[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2882822	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs342670	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs342671	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342674	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342675	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342676	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342679	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342682	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs342683	0.83[ASN][1000 genomes]
rs342684	0.87[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342685	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342686	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342695	0.83[CEU][hapmap]
rs345435	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3852116	0.81[EUR][1000 genomes]
rs3864178	0.81[EUR][1000 genomes]
rs393695	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs429039	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs435417	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs457538	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs460929	0.94[JPT][hapmap]
rs461810	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs466165	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4773644	0.88[JPT][hapmap]
rs516860	0.94[JPT][hapmap]
rs523428	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs536822	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs553717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554857	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55924226	0.81[EUR][1000 genomes]
rs560759	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492560	0.81[EUR][1000 genomes]
rs72643254	0.86[ASN][1000 genomes]
rs7337822	0.81[CEU][hapmap]
rs7338975	0.88[JPT][hapmap]
rs746612	0.81[CEU][hapmap]
rs7986332	0.88[JPT][hapmap]
rs7986797	0.88[JPT][hapmap]
rs7988059	0.94[JPT][hapmap]
rs7991243	0.89[JPT][hapmap]
rs914557	0.81[CEU][hapmap]
rs9556110	0.89[JPT][hapmap]
rs9556111	0.93[JPT][hapmap]
rs9589322	0.81[CEU][hapmap]
rs9589323	0.81[CEU][hapmap]
rs9589324	0.81[CEU][hapmap]
rs9589327	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92336000-92347400	Weak transcription	Hela-S3	cervix

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