Variant report

Variant	rs466165
Chromosome Location	chr13:92343339-92343340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:91998739..92001171-chr13:92343313..92345565,2	K562	blood:
2	chr13:91998739..92003103-chr13:92342674..92345565,4	K562	blood:
3	chr13:92008336..92010163-chr13:92341417..92343555,2	K562	blood:
4	chr13:92343175..92346905-chr13:92348451..92351439,4	K562	blood:
5	chr13:92001171..92002879-chr13:92342249..92344359,2	K562	blood:

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10219980	0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs10492611	0.91[EUR][1000 genomes]
rs11619422	0.91[EUR][1000 genomes]
rs11841822	0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs11843202	0.91[EUR][1000 genomes]
rs11843298	0.91[EUR][1000 genomes]
rs1326742	0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs1348663	0.86[EUR][1000 genomes]
rs1365874	0.91[EUR][1000 genomes]
rs1365875	0.91[EUR][1000 genomes]
rs1373863	0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs1409600	0.89[EUR][1000 genomes]
rs1409602	0.91[EUR][1000 genomes]
rs1409603	0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs1412311	0.92[EUR][1000 genomes]
rs1412312	0.92[EUR][1000 genomes]
rs1584154	0.91[EUR][1000 genomes]
rs163728	0.83[ASN][1000 genomes]
rs163926	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs163929	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs163930	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs163932	0.89[JPT][hapmap]
rs163933	0.89[JPT][hapmap]
rs168216	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16946366	0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs16946409	0.89[EUR][1000 genomes]
rs16946412	0.89[EUR][1000 genomes]
rs16946426	0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs16946459	0.91[EUR][1000 genomes]
rs1822915	0.91[EUR][1000 genomes]
rs1822916	0.91[EUR][1000 genomes]
rs182924	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs182925	0.90[EUR][1000 genomes]
rs1831567	0.92[EUR][1000 genomes]
rs1831568	0.92[EUR][1000 genomes]
rs184661	0.91[EUR][1000 genomes]
rs191479	0.83[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs191480	0.90[EUR][1000 genomes]
rs2148530	0.86[EUR][1000 genomes]
rs2882822	0.92[EUR][1000 genomes]
rs342670	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs342671	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs342674	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs342675	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs342676	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs342677	0.81[TSI][hapmap]
rs342678	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs342679	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs342682	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs342683	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs342684	0.83[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342685	0.82[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342686	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs342692	0.85[EUR][1000 genomes]
rs342693	0.81[TSI][hapmap]
rs345435	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3852116	0.92[EUR][1000 genomes]
rs3864178	0.92[EUR][1000 genomes]
rs3906488	0.89[EUR][1000 genomes]
rs393695	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs429039	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs435417	0.93[ASW][hapmap];0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs457538	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs460929	0.89[JPT][hapmap]
rs461810	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4773644	0.84[JPT][hapmap]
rs516860	0.90[JPT][hapmap]
rs523428	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs532989	0.91[EUR][1000 genomes]
rs536822	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs553717	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs554857	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55924226	0.92[EUR][1000 genomes]
rs560759	0.83[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58166883	0.86[EUR][1000 genomes]
rs60635585	0.91[EUR][1000 genomes]
rs60790837	0.86[EUR][1000 genomes]
rs6492560	0.92[EUR][1000 genomes]
rs72643220	0.89[EUR][1000 genomes]
rs72643226	0.91[EUR][1000 genomes]
rs72643228	0.91[EUR][1000 genomes]
rs72643254	0.88[ASN][1000 genomes]
rs7321165	0.89[EUR][1000 genomes]
rs7337822	0.91[EUR][1000 genomes]
rs7338975	0.84[JPT][hapmap]
rs7986332	0.84[JPT][hapmap]
rs7986797	0.84[JPT][hapmap]
rs7988059	0.89[JPT][hapmap]
rs7991243	0.85[JPT][hapmap]
rs914557	0.91[EUR][1000 genomes]
rs9556110	0.85[JPT][hapmap]
rs9556111	0.93[JPT][hapmap]
rs9583950	0.86[EUR][1000 genomes]
rs9583952	0.91[EUR][1000 genomes]
rs9589322	0.90[EUR][1000 genomes]
rs9589323	0.89[EUR][1000 genomes]
rs9589324	0.88[EUR][1000 genomes]
rs9589326	0.89[EUR][1000 genomes]
rs9589327	0.87[TSI][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753383	chr13:92226599-92462699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92336000-92347400	Weak transcription	Hela-S3	cervix

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