Variant report

Variant	rs72646706
Chromosome Location	chr1:9580177-9580178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:9572733..9575985-chr1:9578486..9581199,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12022881	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12023288	0.94[ASN][1000 genomes]
rs12037667	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12040542	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12045459	0.94[ASN][1000 genomes]
rs12045493	0.94[ASN][1000 genomes]
rs12084279	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28719694	0.90[ASN][1000 genomes]
rs4423053	0.89[ASN][1000 genomes]
rs4926482	0.83[ASN][1000 genomes]
rs55655211	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55687246	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55780537	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55986711	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56012411	0.92[EUR][1000 genomes]
rs56026893	0.85[ASN][1000 genomes]
rs56053581	0.84[ASN][1000 genomes]
rs58478478	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60744607	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6675436	0.83[ASN][1000 genomes]
rs72646708	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72646709	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72646711	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72646712	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72646713	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72646718	0.91[ASN][1000 genomes]
rs7411273	0.83[ASN][1000 genomes]
rs7525099	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7544083	0.84[ASN][1000 genomes]
rs9430181	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931984	chr1:8879337-9694749	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	570 gene(s)	inside rSNPs	diseases
2	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
3	nsv1013224	chr1:9441040-9699768	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv464283	chr1:9495571-9677853	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv545363	chr1:9495571-9677853	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv3451759	chr1:9566735-9590683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:9555800-9599400	Weak transcription	Right Atrium	heart
2	chr1:9570600-9580400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:9578400-9581000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr1:9578800-9580800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr1:9579000-9590400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:9579800-9581000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:9580000-9580800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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