Variant report

Variant	rs7525099
Chromosome Location	chr1:9585841-9585842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:9585423..9586944-chr1:9587293..9590310,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10864429	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12022881	0.93[CEU][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12023288	0.84[ASN][1000 genomes]
rs12037667	0.92[CEU][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12040542	0.92[CEU][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12045459	0.84[ASN][1000 genomes]
rs12045493	0.84[ASN][1000 genomes]
rs12070568	0.86[ASN][1000 genomes]
rs12084279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923984	0.85[ASN][1000 genomes]
rs4074744	0.82[ASN][1000 genomes]
rs55655211	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55687246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55780537	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55986711	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56012411	0.87[EUR][1000 genomes]
rs57272167	0.86[ASN][1000 genomes]
rs58478478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60744607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540961	0.86[ASN][1000 genomes]
rs6540962	0.86[ASN][1000 genomes]
rs6698575	0.89[ASN][1000 genomes]
rs72646706	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72646708	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72646709	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72646711	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72646712	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72646713	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72646715	0.91[ASN][1000 genomes]
rs7411273	0.97[ASN][1000 genomes]
rs9430174	0.85[ASN][1000 genomes]
rs9430182	0.82[ASN][1000 genomes]
rs9430273	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9430274	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931984	chr1:8879337-9694749	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	570 gene(s)	inside rSNPs	diseases
2	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
3	nsv1013224	chr1:9441040-9699768	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv464283	chr1:9495571-9677853	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv545363	chr1:9495571-9677853	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv3451759	chr1:9566735-9590683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:9555800-9599400	Weak transcription	Right Atrium	heart
2	chr1:9579000-9590400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:9581000-9587000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:9585000-9586800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:9585000-9587200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:9585200-9592600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:9585400-9586800	Enhancers	HepG2	liver
8	chr1:9585800-9586800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links