Variant report

Variant	rs72653185
Chromosome Location	chr6:76209391-76209392
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr6:76209281-76209890	A549	lung:	n/a	n/a
2	EP300	chr6:76209250-76209841	A549	lung:	n/a	chr6:76209373-76209387
3	CEBPB	chr6:76209366-76209822	A549	lung:	n/a	chr6:76209587-76209598
4	CEBPB	chr6:76209240-76209840	A549	lung:	n/a	chr6:76209587-76209598
5	EP300	chr6:76209283-76209881	A549	lung:	n/a	chr6:76209373-76209387
6	TCF12	chr6:76209223-76209951	A549	lung:	n/a	n/a

Variant related genes	Relation type
RPL26P20	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12662012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664027	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2275114	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35780943	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4301274	1.00[AMR][1000 genomes]
rs72653191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72653192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72653196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72653198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72654703	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72654704	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72654705	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72654706	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72654707	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654708	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654709	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72654710	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72654711	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72654712	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72654713	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72654715	1.00[AMR][1000 genomes]
rs72654716	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654717	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654718	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654719	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654720	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654721	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654722	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654723	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654724	1.00[AMR][1000 genomes]
rs72654725	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654727	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654728	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654729	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654730	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654731	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654732	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654733	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654734	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654735	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654736	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654737	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654738	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654739	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654740	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654741	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654742	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654743	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654744	0.81[EUR][1000 genomes]
rs72654745	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654746	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72654747	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024079	chr6:75848556-76238519	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
5	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
6	nsv1032245	chr6:76045537-76545703	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv538313	chr6:76045537-76545703	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
8	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv603770	chr6:76200514-76277296	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv5353	chr6:76205962-76218316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76203200-76214400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:76203800-76214400	Weak transcription	Left Ventricle	heart
3	chr6:76203800-76215000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:76204000-76209400	Weak transcription	Psoas Muscle	Psoas
5	chr6:76205000-76213600	Enhancers	HUVEC	blood vessel
6	chr6:76205400-76213200	Weak transcription	NHLF	lung
7	chr6:76206200-76211600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:76206400-76209400	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:76207400-76209400	Enhancers	A549	lung
10	chr6:76208600-76209800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:76208800-76212800	Weak transcription	Fetal Lung	lung
12	chr6:76209000-76214400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:76209000-76215000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:76209200-76209600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links