Variant report

Variant	rs72656522
Chromosome Location	chr8:63859983-63859984
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10093652	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10096151	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11786957	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11995525	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929920	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16929982	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16930023	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16930077	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2736683	0.82[EUR][1000 genomes]
rs58909118	0.84[EUR][1000 genomes]
rs61056009	0.82[EUR][1000 genomes]
rs61594679	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72656527	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72656534	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72658314	0.83[EUR][1000 genomes]
rs72658324	0.84[EUR][1000 genomes]
rs7834288	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63858800-63860000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:63858800-63860600	Enhancers	Fetal Intestine Large	intestine
3	chr8:63858800-63860600	Enhancers	Fetal Intestine Small	intestine
4	chr8:63859600-63860000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:63859600-63877800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:63859800-63860000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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