Variant report

Variant	rs72682882
Chromosome Location	chr4:120757701-120757702
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11098544	0.93[ASN][1000 genomes]
rs17007018	0.87[ASN][1000 genomes]
rs2304801	0.83[ASN][1000 genomes]
rs56036619	0.93[ASN][1000 genomes]
rs56038013	1.00[ASN][1000 genomes]
rs56234746	0.83[ASN][1000 genomes]
rs72682827	0.83[ASN][1000 genomes]
rs72682828	0.83[ASN][1000 genomes]
rs72682832	0.83[ASN][1000 genomes]
rs72682843	0.83[ASN][1000 genomes]
rs72682844	0.83[ASN][1000 genomes]
rs72682877	0.93[ASN][1000 genomes]
rs72682884	1.00[ASN][1000 genomes]
rs72682885	1.00[ASN][1000 genomes]
rs72682891	1.00[ASN][1000 genomes]
rs72682898	1.00[ASN][1000 genomes]
rs72682902	0.93[ASN][1000 genomes]
rs72684508	0.93[ASN][1000 genomes]
rs72684511	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120757200-120758200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:120757200-120758600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:120757600-120758200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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