Variant report

Variant	rs56234746
Chromosome Location	chr4:120714908-120714909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11098544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007018	0.86[EUR][1000 genomes]
rs2304801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55754134	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56036619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56038013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56042330	0.81[EUR][1000 genomes]
rs72682827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682845	1.00[EUR][1000 genomes]
rs72682877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72682882	0.83[ASN][1000 genomes]
rs72682884	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72682885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72682891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72682897	1.00[EUR][1000 genomes]
rs72682898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72682901	1.00[EUR][1000 genomes]
rs72682902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72684508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72684509	1.00[EUR][1000 genomes]
rs72684511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72684514	1.00[EUR][1000 genomes]
rs72684533	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72684534	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72684540	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684541	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684560	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684561	1.00[AMR][1000 genomes]
rs72684562	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684564	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684567	0.81[EUR][1000 genomes]
rs72684570	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684581	0.81[EUR][1000 genomes]
rs72684584	0.81[EUR][1000 genomes]
rs72684587	0.81[EUR][1000 genomes]
rs72684588	0.85[EUR][1000 genomes]
rs72684589	0.85[EUR][1000 genomes]
rs72684590	0.85[EUR][1000 genomes]
rs72684591	0.85[EUR][1000 genomes]
rs72684592	0.85[EUR][1000 genomes]
rs72684593	0.85[EUR][1000 genomes]
rs72684595	0.85[EUR][1000 genomes]
rs72684596	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120713200-120715400	Weak transcription	Small Intestine	intestine
2	chr4:120713800-120717400	Weak transcription	Aorta	Aorta
3	chr4:120714600-120717600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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