Variant report

Variant	rs72682845
Chromosome Location	chr4:120724254-120724255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11098544	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17007018	0.86[EUR][1000 genomes]
rs2304801	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55754134	0.81[EUR][1000 genomes]
rs56036619	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56038013	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56042330	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56234746	1.00[EUR][1000 genomes]
rs72678577	1.00[AFR][1000 genomes]
rs72682827	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72682828	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72682832	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72682843	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72682844	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72682877	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72682884	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72682885	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72682891	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72682897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72682898	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72682901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72682902	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72684508	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72684509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72684511	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72684514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72684533	0.93[EUR][1000 genomes]
rs72684534	0.93[EUR][1000 genomes]
rs72684540	0.81[EUR][1000 genomes]
rs72684541	0.81[EUR][1000 genomes]
rs72684560	0.81[EUR][1000 genomes]
rs72684562	0.81[EUR][1000 genomes]
rs72684564	0.81[EUR][1000 genomes]
rs72684567	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684570	0.81[EUR][1000 genomes]
rs72684581	0.81[EUR][1000 genomes]
rs72684584	0.81[EUR][1000 genomes]
rs72684587	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684588	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72684589	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72684590	0.85[EUR][1000 genomes]
rs72684591	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72684592	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72684593	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72684594	1.00[AMR][1000 genomes]
rs72684595	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72684596	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72684597	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72684599	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72684600	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120724200-120724400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:120724200-120724400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:120724200-120724400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:120724200-120724400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:120724200-120724400	Bivalent/Poised TSS	Adipose Nuclei	Adipose

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