Variant report

Variant	rs72684560
Chromosome Location	chr4:120853650-120853651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:120853485..120855986-chr4:120857672..120860298,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC110373.1-5	chr4:120853610-120853772	NONHSAT098107

Variant related genes	Relation type
ENSG00000250183	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11098544	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2304801	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55754134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56036619	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56038013	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56042330	0.88[EUR][1000 genomes]
rs56234746	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682827	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682828	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682832	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682843	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682844	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682845	0.81[EUR][1000 genomes]
rs72682877	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682884	1.00[AMR][1000 genomes]
rs72682885	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682891	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682897	0.81[EUR][1000 genomes]
rs72682898	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72682901	0.81[EUR][1000 genomes]
rs72682902	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684508	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684509	0.81[EUR][1000 genomes]
rs72684511	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684514	0.81[EUR][1000 genomes]
rs72684533	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72684534	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72684540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72684541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72684542	0.89[EUR][1000 genomes]
rs72684561	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684567	0.88[EUR][1000 genomes]
rs72684570	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684581	0.88[EUR][1000 genomes]
rs72684584	0.88[EUR][1000 genomes]
rs72684587	0.88[EUR][1000 genomes]
rs72684588	0.81[EUR][1000 genomes]
rs72684589	0.81[EUR][1000 genomes]
rs72684590	0.81[EUR][1000 genomes]
rs72684591	0.81[EUR][1000 genomes]
rs72684592	0.81[EUR][1000 genomes]
rs72684593	0.81[EUR][1000 genomes]
rs72684595	0.81[EUR][1000 genomes]
rs72684596	0.81[EUR][1000 genomes]
rs72684597	0.81[EUR][1000 genomes]
rs72684599	0.81[EUR][1000 genomes]
rs72684600	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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