Variant report
| Variant | rs72684561 |
|---|---|
| Chromosome Location | chr4:120854042-120854043 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:120853485..120855986-chr4:120857672..120860298,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250183 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11098544 | 1.00[AMR][1000 genomes] |
| rs2304801 | 1.00[AMR][1000 genomes] |
| rs55754134 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56036619 | 1.00[AMR][1000 genomes] |
| rs56038013 | 1.00[AMR][1000 genomes] |
| rs56234746 | 1.00[AMR][1000 genomes] |
| rs72682827 | 1.00[AMR][1000 genomes] |
| rs72682828 | 1.00[AMR][1000 genomes] |
| rs72682832 | 1.00[AMR][1000 genomes] |
| rs72682843 | 1.00[AMR][1000 genomes] |
| rs72682844 | 1.00[AMR][1000 genomes] |
| rs72682877 | 1.00[AMR][1000 genomes] |
| rs72682884 | 1.00[AMR][1000 genomes] |
| rs72682885 | 1.00[AMR][1000 genomes] |
| rs72682891 | 1.00[AMR][1000 genomes] |
| rs72682898 | 1.00[AMR][1000 genomes] |
| rs72682902 | 1.00[AMR][1000 genomes] |
| rs72684508 | 1.00[AMR][1000 genomes] |
| rs72684511 | 1.00[AMR][1000 genomes] |
| rs72684533 | 1.00[AMR][1000 genomes] |
| rs72684534 | 1.00[AMR][1000 genomes] |
| rs72684540 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72684541 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72684560 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72684562 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72684564 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72684570 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv879849 | chr4:120823634-120922444 | Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
