Variant report
| Variant | rs72687671 |
|---|---|
| Chromosome Location | chr8:114244489-114244490 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs4369017 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4466429 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6469454 | 0.82[EUR][1000 genomes] |
| rs72670703 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72683889 | 1.00[AMR][1000 genomes] |
| rs72685831 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72685848 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72685849 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72685876 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72685879 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72685880 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72685886 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72685896 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72687622 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72687625 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72687627 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72687630 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72687673 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72687685 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7813842 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7828035 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754581 | chr8:114029421-114419106 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv831428 | chr8:114102983-114320802 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv916637 | chr8:114116303-114338450 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1035014 | chr8:114180224-114261619 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1022803 | chr8:114180224-114354093 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1019367 | chr8:114205501-114288454 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv1034285 | chr8:114227114-114278041 | Active TSS Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:114244400-114244600 | Enhancers | Dnd41 | blood |
