Variant report
| Variant | rs7828035 |
|---|---|
| Chromosome Location | chr8:114323417-114323418 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRPS1-4 | chr8:114321434-114327022 | NONHSAT128345 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10100569 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs10111690 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs12547383 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs4369017 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4404945 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs4461928 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs4466429 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs4596683 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs4876511 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs6469454 | 1.00[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs72670703 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72685831 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs72685848 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs72685849 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs72685876 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs72685879 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72685880 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72685886 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72685896 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72687622 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72687625 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72687627 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72687630 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72687671 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72687673 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72687685 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs748960 | 1.00[CHB][hapmap] |
| rs7813842 | 0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7827767 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs7830103 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs7837326 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs7842307 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754581 | chr8:114029421-114419106 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv916637 | chr8:114116303-114338450 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1022803 | chr8:114180224-114354093 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
