Variant report
| Variant | rs72688542 |
|---|---|
| Chromosome Location | chr4:103044773-103044774 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10016408 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10516488 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10516489 | 0.80[EUR][1000 genomes] |
| rs10516490 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11730990 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11731061 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11737896 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1386174 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17211702 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17221648 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17271413 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4536928 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4550926 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs55991708 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72686802 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72688506 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72688558 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72688560 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72688563 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7675302 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869164 | chr4:102483189-103213842 | Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv879682 | chr4:102859835-103088491 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:103044400-103045000 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
